SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Abnormality of male external genitalia

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Phenotypic abnormality [HP:0000118] <25>
+ + + + 4:   Abnormality of the genitourinary system [HP:0000119] <5>(73|72) (80|28|9)
+ + + 3:   Abnormality of the genital system [HP:0000078] <3>(35|34) (37|10|3)
+ + 2:   Abnormal reproductive system morphology [HP:0012243] <10>(28|27) (29|4|1)
+ 1:   Abnormal external genitalia [HP:0000811] <7>(15|11) (16|1|1)
+ 1:   Abnormality of the male genitalia [HP:0010461] <2>(14|11) (16|1|1)
0:   Abnormality of male external genitalia [HP:0000032] <9>(13|10) (15|1|1)
- 1:   Abnormal testis morphology [HP:0000035] <21>(9|8) (10|0|1)
- 1:   Abnormality of the scrotum [HP:0000045] <18>(0|0) (0|0|0)
- 1:   Abnormality of the penis [HP:0000036] <16>(3|4) (4|0|0)
- 1:   Abnormality of the urethra [HP:0000795] <12>(3|2) (4|0|0)
- 1:   Hypoplastic male external genitalia [HP:0000050] <3>(1|1) (1|0|0)
- 1:   Neoplasm of the male external genitalia [HP:0100848] <3>(2|1) (2|0|0)
- 1:   Male pseudohermaphroditism [HP:0000037] <1>(0|1) (1|0|0)
- 1:   Ambiguous genitalia, male [HP:0000033](0|0) (0|0|0)
- 1:   Female external genitalia in individual with 46,XY karyotype [HP:0008730](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Smc hinge domain0Direct
Zn-finger domain of Sec23/240Direct
SET domain0.00001206Direct
Ribonuclease H-like0.0000476Direct
ARID-like0.001446Inherited
Bromodomain0.004485Inherited
FYVE/PHD zinc finger0.008291Inherited
Clavaminate synthase-like0.0083Inherited
WD40 repeat-like0.5903Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.7625Inherited
DEATH domain0.8147Inherited
Family A G protein-coupled receptor-like0.843Inherited
Nuclear receptor ligand-binding domain0.9532Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Zn-finger domain of Sec23/240Direct
Smc hinge domain0Direct
PHD domain0.00002579Direct
Histone lysine methyltransferases0.0000859Direct
ARID domain0.0008575Direct
HMG-box0.002505Inherited
Bromodomain0.002928Inherited
Rhodopsin-like0.4961Inherited
Nuclear receptor ligand-binding domain0.9327Inherited
RecA protein-like (ATPase-domain)0.9691Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Smc hinge domain0Direct
Zn-finger domain of Sec23/240Direct
SET domain0.000005105Direct
Ribonuclease H-like0.00002127Direct
ARID-like0.0007886Direct
HMG-box0.002287Inherited
Bromodomain0.002698Inherited
FYVE/PHD zinc finger0.005264Inherited
Clavaminate synthase-like0.005272Inherited
WD40 repeat-like0.5474Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.7256Inherited
DEATH domain0.7802Inherited
Family A G protein-coupled receptor-like0.8101Inherited
RING/U-box0.8709Inherited
Nuclear receptor ligand-binding domain0.9281Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.002485Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)