SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Abnormality of renal glomerulus morphology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Phenotypic abnormality [HP:0000118] <25>
+ + + + + + 6:   Abnormality of the genitourinary system [HP:0000119] <5>(73|72) (80|28|9)
+ + + + + 5:   Abnormality of the urinary system [HP:0000079] <4>(38|41) (45|15|7)
+ + + + 4:   Abnormality of the upper urinary tract [HP:0010935] <2>(21|22) (22|7|3)
+ + + 3:   Abnormality of the kidney [HP:0000077] <3>(17|16) (18|6|3)
+ + 2:   Abnormal renal morphology [HP:0012210] <26>(14|11) (14|4|1)
+ + 2:   Abnormal renal cortex morphology [HP:0011035] <6>(4|5) (4|2|0)
+ 1:   Abnormal renal corpuscle morphology [HP:0031263] <2>(4|5) (4|2|0)
+ 1:   Abnormal nephron morphology [HP:0012575] <3>(4|5) (4|2|0)
0:   Abnormality of renal glomerulus morphology [HP:0000095] <16>(4|5) (4|2|0)
- 1:   Glomerulonephritis [HP:0000099] <4>(2|2) (2|0|0)
- 1:   Glomerular deposits [HP:0030949] <3>(0|0) (0|0|0)
- 1:   Mesangial abnormality [HP:0001966] <3>(0|0) (0|0|0)
- 1:   Glomerulosclerosis [HP:0000096] <2>(0|0) (0|0|0)
- 1:   Abnormal glomerular capillary morphology [HP:0025006] <1>(0|0) (0|0|0)
- 1:   Diffuse glomerular basement membrane lamellation [HP:0030034](1|1) (1|1|0)
- 1:   Endocapillary hypercellularity [HP:0025363](0|0) (0|0|0)
- 1:   Extracapillary hypercellularity [HP:0025364](0|0) (0|0|0)
- 1:   Glomerulomegaly [HP:0030162](0|0) (0|0|0)
- 1:   Glomerulopathy [HP:0100820](1|2) (1|1|0)
- 1:   Lobular glomerulopathy [HP:0008636](0|0) (0|0|0)
- 1:   Multiple glomerular cysts [HP:0100611](0|0) (0|0|0)
- 1:   Periglomerular fibrosis [HP:0032417](0|0) (0|0|0)
- 1:   Renal juxtaglomerular cell hypertrophy/hyperplasia [HP:0000111](0|0) (0|0|0)
- 1:   Thickening of the glomerular basement membrane [HP:0004722](1|1) (1|1|0)
- 1:   Thin glomerular basement membrane [HP:0012577](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
TNF-like0.001833Inherited
C-type lectin-like0.005821Inherited
Cysteine-rich domain0.01579Inherited
MHC antigen-recognition domain0.5018Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Noncollagenous (NC1) domain of collagen IV0.0002722Direct
TNF-like0.001207Inherited
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.006013Inherited
C1 set domains (antibody constant domain-like)0.4615Inherited
MHC antigen-recognition domain0.4615Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
TNF-like0.001019Inherited
C-type lectin-like0.003584Inherited
Cysteine-rich domain0.01053Inherited
MHC antigen-recognition domain0.4575Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56436,56436
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.0008476Direct
    54452,48726
  • 54452 - MHC antigen-recognition domain
  • 48726 - Immunoglobulin
  • 0.4575Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)