SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Abnormal cornea morphology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Phenotypic abnormality [HP:0000118] <25>
+ + + 3:   Abnormality of the eye [HP:0000478] <2>(64|78) (69|38|28)
+ + 2:   Abnormal eye morphology [HP:0012372] <12>(39|48) (41|29|22)
+ 1:   Abnormal anterior eye segment morphology [HP:0004328] <8>(17|22) (19|15|14)
0:   Abnormal cornea morphology [HP:0000481] <18>(10|12) (10|4|1)
- 1:   Corneal dystrophy [HP:0001131] <8>(2|2) (2|1|1)
- 1:   Corneal opacity [HP:0007957] <5>(3|3) (3|1|0)
- 1:   Abnormal corneal endothelium morphology [HP:0011488] <4>(1|1) (1|0|0)
- 1:   Abnormal corneal epithelium morphology [HP:0011495] <3>(2|5) (2|2|0)
- 1:   Abnormality of corneal size [HP:0001120] <3>(2|1) (2|0|0)
- 1:   Abnormality of corneal stroma [HP:0011492] <3>(0|1) (0|0|0)
- 1:   Abnormality of the curvature of the cornea [HP:0100691] <3>(0|0) (0|0|0)
- 1:   Abnormality of corneal thickness [HP:0011486] <2>(1|1) (1|0|0)
- 1:   Abnormality of the line of Schwalbe [HP:0008048] <2>(0|0) (0|0|0)
- 1:   Abnormality of the corneal limbus [HP:0025348] <1>(0|0) (0|0|0)
- 1:   Corneal degeneration [HP:0007705] <1>(0|0) (0|0|0)
- 1:   Abnormality of corneal shape [HP:0040004](0|0) (0|0|0)
- 1:   Cornea verticillata [HP:0500008](0|0) (0|0|0)
- 1:   Corneal neovascularization [HP:0011496](0|0) (0|0|0)
- 1:   Corneal perforation [HP:0100583](0|0) (0|0|0)
- 1:   Decreased corneal reflex [HP:0008000](0|0) (0|0|0)
- 1:   Decreased corneal sensation [HP:0012155](0|0) (0|0|0)
- 1:   Limbal dermoid [HP:0001140](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Smc hinge domain0Direct
Glycosyl hydrolase domain0.004572Inherited
(Trans)glycosidases0.01696Inherited
FnI-like domain0.07379Inherited
RNI-like0.2494Inherited
DEATH domain0.2985Inherited
Nucleotide-diphospho-sugar transferases0.5816Inherited
gamma-Crystallin-like0.6722Inherited
Homeodomain-like0.7366Inherited
Intermediate filament protein, coiled coil region0.793Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Smc hinge domain0Direct
Noncollagenous (NC1) domain of collagen IV0.001925Inherited
beta-glycanases0.002559Inherited
Pyrin domain, PYD0.00866Inherited
VWC domain0.0848Inherited
Arylsulfatase0.1281Inherited
Transglutaminase core0.1929Inherited
I set domains0.367Inherited
C1 set domains (antibody constant domain-like)0.3939Inherited
Crystallins/Ca-binding development proteins0.63Inherited
Homeodomain0.7194Inherited
Intermediate filament protein, coiled coil region0.7568Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Smc hinge domain0Direct
Glycosyl hydrolase domain0.002759Inherited
(Trans)glycosidases0.01138Inherited
FnI-like domain0.05643Inherited
RNI-like0.2127Inherited
DEATH domain0.2587Inherited
Nucleotide-diphospho-sugar transferases0.5387Inherited
gamma-Crystallin-like0.6322Inherited
Homeodomain-like0.6988Inherited
Intermediate filament protein, coiled coil region0.7575Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51445,51011
  • 51445 - (Trans)glycosidases
  • 51011 - Glycosyl hydrolase domain
  • 0.002759Inherited
    56436,56436
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.1297Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3402Inherited
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0.395Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.395Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)