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Phenotypic Abnormality (PA): Abnormality of vision

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Abnormality of the eye [HP:0000478] <2>(63|76) (67|38|28)
+ 1:   Abnormal eye physiology [HP:0012373] <17>(33|46) (37|22|20)
0:   Abnormality of vision [HP:0000504] <15>(6|17) (10|8|8)
- 1:   Abnormal contrast sensitivity [HP:0032036] <5>(0|0) (0|0|0)
- 1:   Visual impairment [HP:0000505] <4>(0|8) (3|6|7)
- 1:   Color vision defect [HP:0000551] <3>(2|2) (2|0|0)
- 1:   Nyctalopia [HP:0000662] <3>(0|0) (0|1|0)
- 1:   Abnormality of binocular vision [HP:0011514] <2>(2|2) (2|1|0)
- 1:   Difficulty adjusting to changes in luminance [HP:0030512] <2>(0|0) (0|0|0)
- 1:   Blurred vision [HP:0000622] <1>(0|0) (0|0|0)
- 1:   Vitreous floaters [HP:0100832] <1>(0|0) (0|0|0)
- 1:   Amaurosis fugax [HP:0100576](2|2) (2|1|0)
- 1:   Bradyopsia [HP:0030511](0|0) (0|0|0)
- 1:   Hemeralopia [HP:0012047](0|0) (0|0|0)
- 1:   Metamorphopsia [HP:0012508](0|0) (0|0|0)
- 1:   Photophobia [HP:0000613](1|3) (2|0|0)
- 1:   Photopsia [HP:0030786](0|0) (0|0|0)
- 1:   Poor visual behavior for age [HP:0025152](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.08122Inherited
cAMP-binding domain-like0.09681Inherited
Family A G protein-coupled receptor-like0.3511Inherited
Ribosomal protein S5 domain 2-like0.5091Inherited
Nicotinic receptor ligand binding domain-like0.609Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.609Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Ferredoxin domains from multidomain proteins0Direct
IF2B-like0Direct
XPF/Rad1/Mus81 nuclease0Direct
Clathrin adaptor core protein0Direct
DNA gyrase/MutL, second domain0.005454Inherited
DNA gyrase/MutL, N-terminal domain0.005454Inherited
GAF domain0.01688Inherited
Pyrin domain, PYD0.04767Inherited
28-residue LRR0.06404Inherited
cAMP-binding domain0.1134Inherited
Fibroblast growth factors (FGF)0.2367Inherited
Rhodopsin-like0.2651Inherited
PDZ domain0.3282Inherited
Phosphate binding protein-like0.3365Inherited
G proteins0.362Inherited
Nicotinic receptor ligand binding domain-like0.5713Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.5713Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GAF domain-like0.01738Inherited
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.06305Inherited
cAMP-binding domain-like0.07628Inherited
RNI-like0.1506Inherited
Family A G protein-coupled receptor-like0.3105Inherited
Periplasmic binding protein-like II0.3345Inherited
Ribosomal protein S5 domain 2-like0.4658Inherited
PDZ domain-like0.5095Inherited
Nicotinic receptor ligand binding domain-like0.5682Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.5682Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52980,47781
  • 52980 - Restriction endonuclease-like
  • 47781 - RuvA domain 2-like
  • 0Direct
    141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.005686Inherited
    55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.01738Inherited
    55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.01738Inherited
    49899,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.1542Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.2357Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.5682Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57581
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0Direct
    57196,57581,57196
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 0Direct
    49899,57196,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    57196,57581,57184
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    141072,141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    57184,57196,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.002463Inherited
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.01738Inherited
    57535,57535,57535
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0.3251Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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