SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Abnormality of prenatal development or birth

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Phenotypic abnormality [HP:0000118] <25>
0:   Abnormality of prenatal development or birth [HP:0001197] <18>(10|15) (12|6|4)
- 1:   Abnormal delivery [HP:0001787] <13>(6|5) (6|0|1)
- 1:   Fetal ultrasound soft marker [HP:0011425] <13>(0|1) (1|0|0)
- 1:   Prenatal maternal abnormality [HP:0002686] <13>(0|1) (0|0|1)
- 1:   Abnormalities of placenta or umbilical cord [HP:0001194] <4>(0|1) (1|2|1)
- 1:   Abnormality of the amniotic fluid [HP:0001560] <4>(0|2) (0|0|0)
- 1:   Hydrops fetalis [HP:0001789] <2>(0|0) (0|0|0)
- 1:   Low APGAR score [HP:0030917] <2>(0|0) (0|0|0)
- 1:   Premature birth [HP:0001622] <2>(1|1) (1|0|0)
- 1:   Prenatal movement abnormality [HP:0001557] <2>(4|4) (4|2|0)
- 1:   Increased nuchal translucency [HP:0010880] <1>(0|0) (0|0|0)
- 1:   Female fetal virilization [HP:0031170](0|0) (0|0|0)
- 1:   Fetal ascites [HP:0001791](0|0) (0|0|0)
- 1:   Fetal distress [HP:0025116](0|0) (0|0|0)
- 1:   Intrauterine fetal demise of one twin after midgestation [HP:0030753](0|0) (0|0|0)
- 1:   Lemon sign [HP:0032269](0|0) (0|0|0)
- 1:   Postterm pregnancy [HP:0031169](0|0) (0|0|0)
- 1:   Preimplantation lethality [HP:0032479](0|0) (0|0|0)
- 1:   Twin-to-twin transfusion [HP:0031110](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Fibrinogen coiled-coil and central regions0Direct
Integrin domains0.0001158Direct
SNARE fusion complex0.02377Inherited
Fibrinogen C-terminal domain-like0.0669Inherited
Clc chloride channel0.07326Inherited
Kelch motif0.09729Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.09855Inherited
Nicotinic receptor ligand binding domain-like0.09855Inherited
Tropomyosin0.106Inherited
POZ domain0.1263Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Fibrinogen coiled-coil and central regions0Direct
Integrin domains0.00006005Direct
Integrin alpha N-terminal domain0.000248Direct
SNARE fusion complex0.01673Inherited
Ras-binding domain, RBD0.03424Inherited
Tetratricopeptide repeat (TPR)0.04173Inherited
RecA protein-like (ATPase-domain)0.05175Inherited
Fibrinogen C-terminal domain-like0.05175Inherited
Clc chloride channel0.05738Inherited
Kelch motif0.07816Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.07917Inherited
Nicotinic receptor ligand binding domain-like0.07917Inherited
Tropomyosin0.08517Inherited
G proteins0.3458Inherited
Complement control module/SCR domain0.582Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Fibrinogen coiled-coil and central regions0Direct
Integrin domains0.00005375Direct
SNARE fusion complex0.01641Inherited
Fibrinogen C-terminal domain-like0.05073Inherited
Clc chloride channel0.05604Inherited
Kelch motif0.0762Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.07729Inherited
Nicotinic receptor ligand binding domain-like0.07729Inherited
Tropomyosin0.08355Inherited
POZ domain0.1014Inherited
Alkaline phosphatase-like0.178Inherited
Complement control module/SCR domain0.5766Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
69318,69179
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 0.000229Direct
    69179,69179
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.000229Direct
    53300,53300
  • 53300 - vWA-like
  • 53300 - vWA-like
  • 0.01641Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.07729Inherited
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.178Inherited
    57535,57535
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0.4671Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    69179,69179,69179
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.000229Direct
    69318,69179,69179
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.000229Direct
    52540,52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.02079Inherited
    57535,57535,57535
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0.1493Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)