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Phenotypic Abnormality (PA): Abnormal large intestine morphology

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Phenotypic abnormality [HP:0000118] <25>
+ + + + 4:   Abnormality of the digestive system [HP:0025031] <6>(63|72) (76|45|24)
+ + + 3:   Abnormality of digestive system morphology [HP:0025033] <2>(12|18) (17|6|3)
+ + + 3:   Abnormality of the gastrointestinal tract [HP:0011024] <3>(22|26) (28|11|3)
+ + 2:   Morphological abnormality of the gastrointestinal tract [HP:0012718] <8>(12|18) (17|6|3)
+ 1:   Abnormal intestine morphology [HP:0002242] <22>(9|11) (13|3|0)
0:   Abnormal large intestine morphology [HP:0002250] <13>(6|5) (6|2|0)
- 1:   Abnormality of the rectum [HP:0002034] <7>(3|3) (3|2|0)
- 1:   Neoplasm of the large intestine [HP:0100834] <5>(3|3) (3|2|0)
- 1:   Aplasia/Hypoplasia of the colon [HP:0100811] <3>(0|0) (0|0|0)
- 1:   Inflammation of the large intestine [HP:0002037] <2>(2|1) (2|0|0)
- 1:   Abnormal large intestinal mucosa morphology [HP:0025090] <1>(0|0) (0|0|0)
- 1:   Colonic atresia [HP:0010448](0|0) (0|0|0)
- 1:   Colonic diverticula [HP:0002253](0|0) (0|0|0)
- 1:   Colonic stenosis [HP:0012851](0|0) (0|0|0)
- 1:   Colonic varices [HP:0012550](0|0) (0|0|0)
- 1:   Duplicated colon [HP:0005223](0|0) (0|0|0)
- 1:   Lymphoid nodular hyperplasia [HP:0032203](0|0) (0|0|0)
- 1:   Malrotation of colon [HP:0004785](0|0) (0|0|0)
- 1:   Stercoral ulcer [HP:0012425](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0001246Direct
Protein kinase-like (PK-like)0.0008627Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0008879Direct
RNI-like0.01068Inherited
Ribosomal protein S5 domain 2-like0.03413Inherited
DEATH domain0.07007Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA gyrase/MutL, second domain0.000004943Direct
DNA gyrase/MutL, N-terminal domain0.000004943Direct
DNA repair protein MutS, domain III0.00008429Direct
28-residue LRR0.00066Direct
DnaQ-like 3'-5' exonuclease0.0008592Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.00006022Direct
Protein kinase-like (PK-like)0.0004638Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0004787Direct
RNI-like0.006995Inherited
Ribosomal protein S5 domain 2-like0.02447Inherited
DEATH domain0.05363Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.000003206Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00006022Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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