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Phenotypic Abnormality (PA): Neoplasm of the gastrointestinal tract

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Abnormality of the digestive system [HP:0025031] <6>(63|72) (76|45|24)
+ + 2:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
+ 1:   Abnormality of the gastrointestinal tract [HP:0011024] <3>(22|26) (28|11|3)
+ 1:   Neoplasm by anatomical site [HP:0011793] <24>(18|21) (21|7|2)
0:   Neoplasm of the gastrointestinal tract [HP:0007378] <16>(6|5) (6|4|0)
- 1:   Neoplasm of the large intestine [HP:0100834] <5>(3|3) (3|2|0)
- 1:   Neoplasm of the stomach [HP:0006753] <5>(2|1) (2|1|0)
- 1:   Intestinal polyp [HP:0005266] <4>(4|3) (5|2|0)
- 1:   Neoplasm of the liver [HP:0002896] <4>(2|2) (2|1|0)
- 1:   Biliary tract neoplasm [HP:0100574] <3>(0|0) (0|0|0)
- 1:   Esophageal neoplasm [HP:0100751] <3>(0|0) (0|0|0)
- 1:   Neoplasm of the small intestine [HP:0100833] <3>(0|0) (0|0|0)
- 1:   Malignant gastrointestinal tract tumors [HP:0006749] <1>(0|0) (0|0|0)
- 1:   Ampulla of Vater carcinoma [HP:0031524](0|0) (0|0|0)
- 1:   Benign gastrointestinal tract tumors [HP:0006719](0|0) (0|0|0)
- 1:   Desmoid tumors [HP:0100245](0|0) (0|0|0)
- 1:   Gastrointestinal stroma tumor [HP:0100723](0|0) (0|0|0)
- 1:   Intestinal carcinoid [HP:0006723](0|0) (0|0|0)
- 1:   Multiple intestinal neurofibromatosis [HP:0005220](0|0) (0|0|0)
- 1:   Primary peritoneal carcinoma [HP:0030406](1|1) (1|0|0)
- 1:   Zollinger-Ellison syndrome [HP:0002044](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0002435Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.004679Inherited
Protein kinase-like (PK-like)0.007229Inherited
BRCT domain0.0173Inherited
Snake toxin-like0.02505Inherited
Ribosomal protein S5 domain 2-like0.08784Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0001772Direct
Rel/Dorsal transcription factors, DNA-binding domain0.0001772Direct
DNA gyrase/MutL, second domain0.0009803Direct
DNA gyrase/MutL, N-terminal domain0.0009803Direct
RecA protein-like (ATPase-domain)0.05116Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0001221Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.002869Inherited
Protein kinase-like (PK-like)0.004605Inherited
BRCT domain0.01173Inherited
Snake toxin-like0.01746Inherited
Ribosomal protein S5 domain 2-like0.06858Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49417,81296
  • 49417 - p53-like transcription factors
  • 81296 - E set domains
  • 0.0001221Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0001221Direct
    50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0.0001221Direct
    55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.0007029Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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