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Phenotypic Abnormality (PA): Neoplasm of the genitourinary tract

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
+ + 2:   Phenotypic abnormality [HP:0000118] <25>
+ 1:   Abnormality of the genitourinary system [HP:0000119] <5>(74|72) (79|29|9)
+ 1:   Neoplasm by anatomical site [HP:0011793] <24>(18|21) (21|7|2)
0:   Neoplasm of the genitourinary tract [HP:0007379] <4>(6|7) (8|2|1)
- 1:   Genital neoplasm [HP:0010787] <6>(6|5) (7|2|0)
- 1:   Urinary tract neoplasm [HP:0010786] <4>(1|4) (2|1|1)
- 1:   Benign genitourinary tract neoplasm [HP:0006778](0|0) (0|0|0)
- 1:   Malignant genitourinary tract tumor [HP:0006758](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.000861Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.002457Inherited
Ribosomal protein S5 domain 2-like0.007356Inherited
BRCT domain0.01188Inherited
Nuclear receptor ligand-binding domain0.03328Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.2343Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA gyrase/MutL, second domain0.00007061Direct
DNA gyrase/MutL, N-terminal domain0.00007061Direct
DNA repair protein MutS, domain III0.0006249Direct
POU-specific domain0.002267Inherited
Nuclear receptor ligand-binding domain0.03035Inherited
ABC transporter ATPase domain-like0.131Inherited
PHD domain0.1862Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0004629Direct
RING/U-box0.001359Inherited
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.001426Inherited
lambda repressor-like DNA-binding domains0.004145Inherited
Ribosomal protein S5 domain 2-like0.004699Inherited
BRCT domain0.007846Inherited
Nuclear receptor ligand-binding domain0.02381Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.1997Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.00004596Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0004629Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49265,49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.004594Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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