SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Neoplasm of the skin

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
+ + 2:   Abnormality of the integument [HP:0001574] <4>(46|69) (58|36|15)
+ 1:   Abnormality of the skin [HP:0000951] <4>(33|53) (45|35|12)
+ 1:   Neoplasm by anatomical site [HP:0011793] <24>(18|21) (21|7|2)
0:   Neoplasm of the skin [HP:0008069] <29>(4|5) (4|3|1)
- 1:   Neurofibromas [HP:0001067] <8>(0|0) (0|0|0)
- 1:   Skin appendage neoplasm [HP:0012842] <8>(0|0) (0|0|0)
- 1:   Cutaneous melanoma [HP:0012056] <4>(0|0) (0|0|0)
- 1:   Papilloma [HP:0012740] <4>(1|1) (1|0|0)
- 1:   Squamous cell carcinoma [HP:0002860] <2>(1|2) (1|1|1)
- 1:   Basal cell carcinoma [HP:0002671] <1>(1|2) (1|1|0)
- 1:   Subcutaneous lipoma [HP:0001031] <1>(0|0) (0|0|0)
- 1:   Acanthoma [HP:0025432](0|0) (0|0|0)
- 1:   Actinic keratosis [HP:0025127](0|0) (0|0|0)
- 1:   Adenoma sebaceum [HP:0009720](0|0) (0|0|0)
- 1:   Cutaneous angiolipomas [HP:0006773](0|0) (0|0|0)
- 1:   Cutaneous leiomyoma [HP:0007620](0|0) (0|0|0)
- 1:   Cutaneous leiomyosarcoma [HP:0006755](0|0) (0|0|0)
- 1:   Cutaneous mastocytosis [HP:0200151](0|0) (0|0|0)
- 1:   Cutaneous myxoma [HP:0030428](0|0) (0|0|0)
- 1:   Eccrine syringofibroadenoma [HP:0031018](0|0) (0|0|0)
- 1:   Fibrofolliculoma [HP:0030436](0|0) (0|0|0)
- 1:   Frontal cutaneous lipoma [HP:0007541](0|0) (0|0|0)
- 1:   Kaposi's sarcoma [HP:0100726](0|0) (0|0|0)
- 1:   Keratoacanthoma [HP:0031525](0|0) (0|0|0)
- 1:   Lymphocytoma cutis [HP:0031549](0|0) (0|0|0)
- 1:   Merkel cell skin cancer [HP:0030447](0|0) (0|0|0)
- 1:   Multiple cutaneous leiomyomas [HP:0007437](0|0) (0|0|0)
- 1:   Multiple cutaneous malignancies [HP:0007606](0|0) (0|0|0)
- 1:   Myxoid subcutaneous tumors [HP:0006769](0|0) (0|0|0)
- 1:   Perifollicular fibroma [HP:0032225](0|0) (0|0|0)
- 1:   Peripheral Schwannoma [HP:0009593](0|0) (0|0|0)
- 1:   Seborrheic keratosis [HP:0031287](0|0) (0|0|0)
- 1:   Steatocystoma multiplex [HP:0012035](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.000091Direct
Ribosomal protein S5 domain 2-like0.0001286Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0006223Direct
Intermediate filament protein, coiled coil region0.001284Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.00005309Direct
DNA gyrase/MutL, second domain0.0000886Direct
DNA gyrase/MutL, N-terminal domain0.0000886Direct
Intermediate filament protein, coiled coil region0.0007645Direct
Laminin-type module0.0183Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.00004339Direct
Ribosomal protein S5 domain 2-like0.00006224Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0003273Direct
Intermediate filament protein, coiled coil region0.0007104Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00004339Direct
    55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.0000789Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1556Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0105Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)