SUPERFAMILY 1.75 HMM library and genome assignments server

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Phenotypic Abnormality (PA): Gonadal neoplasm

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
+ + + + 4:   Phenotypic abnormality [HP:0000118] <25>
+ + + 3:   Neoplasm by anatomical site [HP:0011793] <24>(18|21) (21|7|2)
+ + + 3:   Abnormality of the genitourinary system [HP:0000119] <5>(74|72) (79|29|9)
+ + 2:   Neoplasm of the genitourinary tract [HP:0007379] <4>(6|7) (8|2|1)
+ + 2:   Abnormality of the genital system [HP:0000078] <3>(34|34) (36|10|3)
+ 1:   Genital neoplasm [HP:0010787] <6>(6|5) (7|2|0)
0:   Gonadal neoplasm [HP:0010785] <4>(6|4) (7|2|0)
- 1:   Ovarian neoplasm [HP:0100615] <8>(4|3) (4|2|0)
- 1:   Testicular neoplasm [HP:0010788] <7>(2|1) (2|0|0)
- 1:   Germ cell neoplasia [HP:0100728] <4>(2|1) (2|0|0)
- 1:   Epididymal neoplasm [HP:0030421] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.00001397Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.00007079Direct
BRCT domain0.0009519Direct
Ribosomal protein S5 domain 2-like0.001011Inherited
Nuclear receptor ligand-binding domain0.005602Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.0561Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA gyrase/MutL, second domain0.0000003078Direct
DNA gyrase/MutL, N-terminal domain0.0000003078Direct
DNA repair protein MutS, domain III0.000009734Direct
Nuclear receptor ligand-binding domain0.004902Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.000006251Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.00003345Direct
BRCT domain0.000517Direct
Ribosomal protein S5 domain 2-like0.0005523Direct
RING/U-box0.000682Direct
Nuclear receptor ligand-binding domain0.003493Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.0422Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.0000001739Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000006251Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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