SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Genital neoplasm

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Abnormality of the genitourinary system [HP:0000119] <5>(74|72) (79|29|9)
+ + 2:   Neoplasm by anatomical site [HP:0011793] <24>(18|21) (21|7|2)
+ 1:   Neoplasm of the genitourinary tract [HP:0007379] <4>(6|7) (8|2|1)
+ 1:   Abnormality of the genital system [HP:0000078] <3>(34|34) (36|10|3)
0:   Genital neoplasm [HP:0010787] <6>(6|5) (7|2|0)
- 1:   Vulvar neoplasm [HP:0030416] <5>(0|0) (0|0|0)
- 1:   Gonadal neoplasm [HP:0010785] <4>(6|4) (7|2|0)
- 1:   Uterine neoplasm [HP:0010784] <4>(3|4) (3|2|0)
- 1:   Neoplasm of the male external genitalia [HP:0100848] <3>(2|1) (2|0|0)
- 1:   Vaginal neoplasm [HP:0100650] <2>(0|0) (0|0|0)
- 1:   Fallopian tube carcinoma [HP:0030394](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.001307Inherited
DNA repair protein MutS, domain III0.002039Inherited
Ribosomal protein S5 domain 2-like0.002567Inherited
BRCT domain0.01404Inherited
Nuclear receptor ligand-binding domain0.0343Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.2131Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA gyrase/MutL, second domain0.0000009401Direct
DNA gyrase/MutL, N-terminal domain0.0000009401Direct
DNA repair protein MutS, domain III0.001474Inherited
Nuclear receptor ligand-binding domain0.03039Inherited
ABC transporter ATPase domain-like0.06286Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0007235Direct
DNA repair protein MutS, domain III0.001165Inherited
Ribosomal protein S5 domain 2-like0.001494Inherited
BRCT domain0.009393Inherited
Nuclear receptor ligand-binding domain0.0246Inherited
RING/U-box0.03431Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.1801Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.0000005825Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.001165Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)