SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Regional abnormality of skin

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Phenotypic abnormality [HP:0000118] <25>
+ + + 3:   Abnormality of the integument [HP:0001574] <4>(48|69) (59|37|15)
+ + 2:   Abnormality of the skin [HP:0000951] <4>(34|55) (45|36|12)
+ 1:   Abnormality of skin morphology [HP:0011121] <22>(29|49) (40|31|11)
0:   Regional abnormality of skin [HP:0011356] <11>(6|9) (8|5|1)
- 1:   Abnormality of the plantar skin of foot [HP:0100872] <13>(2|2) (2|3|0)
- 1:   Abnormality of the skin of the palm [HP:0040211] <9>(4|5) (5|2|1)
- 1:   Pterygium [HP:0001059] <6>(2|2) (2|1|0)
- 1:   Abnormal dermatoglyphics [HP:0007477] <5>(1|3) (2|1|0)
- 1:   Abnormality of the periungual region [HP:0100803] <3>(1|1) (1|1|1)
- 1:   Prominent digit pad [HP:0011298] <1>(0|0) (0|0|0)
- 1:   Cutis gyrata of scalp [HP:0010541](0|0) (0|0|0)
- 1:   Knuckle pad [HP:0032541](0|0) (0|0|0)
- 1:   Palmoplantar pustulosis [HP:0100847](0|0) (0|0|0)
- 1:   Pretibial blistering [HP:0012221](0|0) (0|0|0)
- 1:   Pretibial myxedema [HP:0200028](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.01067Inherited
ARID-like0.01262Inherited
Prefoldin0.03501Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.2399Inherited
Nicotinic receptor ligand binding domain-like0.2399Inherited
EGF/Laminin0.5991Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Histone lysine methyltransferases0.0004594Direct
Intermediate filament protein, coiled coil region0.0057Inherited
ARID domain0.007676Inherited
Bromodomain0.0117Inherited
PHD domain0.01361Inherited
Laminin-type module0.07725Inherited
Tyrosine-dependent oxidoreductases0.1005Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1945Inherited
Nicotinic receptor ligand binding domain-like0.1945Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleotide-diphospho-sugar transferases0.0006001Direct
Intermediate filament protein, coiled coil region0.00689Inherited
ARID-like0.008266Inherited
Bromodomain0.01291Inherited
Prefoldin0.02496Inherited
Nicotinic receptor ligand binding domain-like0.204Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.204Inherited
EGF/Laminin0.5563Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.008266Inherited
    46579,64593
  • 46579 - Prefoldin
  • 64593 - Intermediate filament protein, coiled coil region
  • 0.008266Inherited
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0.1188Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.204Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.3536Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.2509Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)