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Phenotypic Abnormality (PA): Neoplasm by histology

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Phenotypic abnormality [HP:0000118] <25>
+ 1:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
0:   Neoplasm by histology [HP:0011792] <7>(5|9) (6|3|0)
- 1:   Hamartoma [HP:0010566] <10>(0|0) (0|0|0)
- 1:   Embryonal neoplasm [HP:0002898] <5>(0|1) (0|0|0)
- 1:   Sarcoma [HP:0100242] <5>(0|2) (1|0|0)
- 1:   Fibrous tissue neoplasm [HP:0012316] <3>(0|1) (0|0|0)
- 1:   Epithelial neoplasm [HP:0031492] <2>(0|0) (0|0|0)
- 1:   Melanoma [HP:0002861] <2>(1|1) (1|0|0)
- 1:   Nervous tissue neoplasm [HP:0030060] <1>(3|6) (3|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0004776Direct
DNA/RNA polymerases0.0005871Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.03279Inherited
BRCT domain0.06671Inherited
Ribosomal protein S5 domain 2-like0.2378Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.00033Direct
Ras-binding domain, RBD0.002978Inherited
Ran binding protein zinc finger-like0.00942Inherited
DNA gyrase/MutL, second domain0.02675Inherited
DNA gyrase/MutL, N-terminal domain0.02675Inherited
FHA domain0.05692Inherited
PLC-like (P variant)0.1391Inherited
ABC transporter ATPase domain-like0.1433Inherited
PHD domain0.3406Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0002478Direct
DNA/RNA polymerases0.0003077Direct
Ran binding protein zinc finger-like0.007722Inherited
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.02343Inherited
BRCT domain0.05091Inherited
Ribosomal protein S5 domain 2-like0.203Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0002478Direct
    50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0.0002478Direct
    55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.02343Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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