SUPERFAMILY 1.75 HMM library and genome assignments server

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Phenotypic Abnormality (PA): Nervous tissue neoplasm

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Neoplasm [HP:0002664] <2>(20|24) (24|8|3)
+ 1:   Neoplasm by histology [HP:0011792] <7>(5|9) (6|3|0)
0:   Nervous tissue neoplasm [HP:0030060] <1>(3|6) (3|2|0)
- 1:   Neuroectodermal neoplasm [HP:0030061] <2>(3|6) (3|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.000002938Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.00001092Direct
Ribosomal protein S5 domain 2-like0.0001864Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA gyrase/MutL, second domain0.0000000459Direct
DNA gyrase/MutL, N-terminal domain0.0000000459Direct
DNA repair protein MutS, domain III0.000002198Direct
Ras-binding domain, RBD0.00002825Direct
FHA domain0.000297Direct
ABC transporter ATPase domain-like0.02201Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.000001262Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.000004839Direct
Ribosomal protein S5 domain 2-like0.00009202Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.00000002276Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000001262Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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