SUPERFAMILY 1.75 HMM library and genome assignments server

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Phenotypic Abnormality (PA): Epileptic encephalopathy

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Phenotypic abnormality [HP:0000118] <25>
+ + + 3:   Abnormality of the nervous system [HP:0000707] <4>(142|168) (156|103|45)
+ + 2:   Abnormality of nervous system physiology [HP:0012638] <26>(101|119) (112|81|39)
+ 1:   Encephalopathy [HP:0001298] <11>(5|6) (6|2|0)
0:   Epileptic encephalopathy [HP:0200134](4|5) (5|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Voltage-gated potassium channels0.000000000003712Direct
Neurotransmitter-gated ion-channel transmembrane pore0.0001045Direct
Nicotinic receptor ligand binding domain-like0.0001045Direct
Periplasmic binding protein-like I0.0004276Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Voltage-gated potassium channels0.00003243Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00004719Direct
Nicotinic receptor ligand binding domain-like0.00004719Direct
L-arabinose binding protein-like0.0001009Direct
Phosphate binding protein-like0.0003853Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Voltage-gated potassium channels0.000000000001411Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00004839Direct
Nicotinic receptor ligand binding domain-like0.00004839Direct
Periplasmic binding protein-like I0.0002146Direct
Periplasmic binding protein-like II0.0006121Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53822,53850
  • 53822 - Periplasmic binding protein-like I
  • 53850 - Periplasmic binding protein-like II
  • 0.000004608Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.00004839Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)