SUPERFAMILY 1.75 HMM library and genome assignments server

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Mammalian Phenotype (MP): neurodegeneration

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   mammalian phenotype [MP:0000001] <29>
+ + 2:   nervous system phenotype [MP:0003631] <2>(98|128) (113|79|50)
+ 1:   abnormal nervous system morphology [MP:0003632] <17>(76|104) (91|64|47)
0:   neurodegeneration [MP:0002229] <4>(4|4) (5|5|3)
- 1:   neuron degeneration [MP:0003224] <8>(3|3) (3|3|1)
- 1:   axon degeneration [MP:0005405] <2>(1|1) (2|2|2)
- 1:   peripheral nervous system degeneration [MP:0000958](0|0) (0|0|0)
- 1:   spongiform encephalopathy [MP:0002654](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GAF domain-like0.01002Inherited
HD-domain/PDEase-like0.0711Inherited
lambda repressor-like DNA-binding domains0.18Inherited
Cysteine proteinases0.3493Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
GAF domain0.006264Inherited
POU-specific domain0.04111Inherited
PDEase0.04139Inherited
Integrin alpha N-terminal domain0.06568Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GAF domain-like0.006261Inherited
HD-domain/PDEase-like0.05207Inherited
Integrin alpha N-terminal domain0.09882Inherited
lambda repressor-like DNA-binding domains0.1452Inherited
Cysteine proteinases0.304Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.006261Inherited
    55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.006261Inherited
    69179,69179
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.04519Inherited
    69318,69179
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 0.04519Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.08656Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.006261Inherited
    69179,69179,69179
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.03963Inherited
    69318,69179,69179
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.04519Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)