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Mammalian Phenotype (MP): abnormal ocular fundus morphology

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   mammalian phenotype [MP:0000001] <29>
+ + + 3:   vision/eye phenotype [MP:0005391] <2>(43|53) (50|27|17)
+ + 2:   abnormal eye morphology [MP:0002092] <23>(39|49) (46|25|15)
+ 1:   abnormal posterior eye segment morphology [MP:0005195] <4>(21|24) (23|14|8)
0:   abnormal ocular fundus morphology [MP:0002864] <2>(19|23) (21|14|8)
- 1:   abnormal retina morphology [MP:0001325] <23>(19|23) (21|14|8)
- 1:   abnormal optic disc morphology [MP:0008259] <3>(2|2) (2|1|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Plexin repeat0.000007731Direct
Sema domain0.0001026Direct
GroEL equatorial domain-like0.002424Inherited
GAF domain-like0.005413Inherited
Cyclin-like0.005966Inherited
E2F-DP heterodimerization region0.009766Inherited
Clc chloride channel0.01544Inherited
CBS-domain pair0.0162Inherited
Tetraspanin0.02714Inherited
TNF-like0.07486Inherited
HD-domain/PDEase-like0.154Inherited
Toll/Interleukin receptor TIR domain0.2246Inherited
EGF/Laminin0.2515Inherited
Metalloproteases ("zincins"), catalytic domain0.631Inherited
HLH, helix-loop-helix DNA-binding domain0.6669Inherited
Notch domain0.7818Inherited
PGBD-like0.8255Inherited
Nuclear receptor ligand-binding domain0.8273Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.8758Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
Plexin repeat0.000005777Direct
Sema domain0.00007338Direct
E2F dimerization segment0.003848Inherited
GAF domain0.003848Inherited
CBS-domain pair0.009032Inherited
Laminin-type module0.011Inherited
Clc chloride channel0.0116Inherited
YWTD domain0.01656Inherited
Cell cycle transcription factor e2f-dp0.01732Inherited
Extracellular domain of cell surface receptors0.02418Inherited
TNF-like0.06484Inherited
POU-specific domain0.1048Inherited
PDEase0.1048Inherited
cAMP-binding domain0.1222Inherited
Cyclin0.1352Inherited
Calmodulin-like0.1479Inherited
HLH, helix-loop-helix DNA-binding domain0.6298Inherited
Notch domain0.7503Inherited
MMP N-terminal domain0.7971Inherited
Matrix metalloproteases, catalytic domain0.7971Inherited
Nuclear receptor ligand-binding domain0.7988Inherited
Nuclear receptor0.7988Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Plexin repeat0.000003356Direct
Sema domain0.00004969Direct
GroEL equatorial domain-like0.00139Inherited
GAF domain-like0.003253Inherited
Cyclin-like0.003602Inherited
E2F-DP heterodimerization region0.006088Inherited
Clc chloride channel0.009935Inherited
CBS-domain pair0.01047Inherited
YWTD domain0.01399Inherited
Tetraspanin0.01826Inherited
TNF-like0.05505Inherited
HD-domain/PDEase-like0.1222Inherited
Toll/Interleukin receptor TIR domain0.1862Inherited
EGF/Laminin0.2112Inherited
Metalloproteases ("zincins"), catalytic domain0.5865Inherited
HLH, helix-loop-helix DNA-binding domain0.6243Inherited
Notch domain0.7458Inherited
PGBD-like0.7925Inherited
Nuclear receptor ligand-binding domain0.7944Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.8469Inherited
Growth factor receptor domain0.925Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00004969Direct
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.0002989Direct
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.0004461Direct
    55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.003253Inherited
    55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.003253Inherited
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0.006088Inherited
    101288,50156
  • 101288 - L27 domain
  • 50156 - PDZ domain-like
  • 0.006088Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.02317Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.1373Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.3216Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.5195Inherited
    57196,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0.7925Inherited
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0.7925Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,90193,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    101288,50156,50044
  • 101288 - L27 domain
  • 50156 - PDZ domain-like
  • 50044 - SH3-domain
  • 0.0003881Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0004405Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.001754Inherited
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.003253Inherited
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.009935Inherited
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.01826Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.4605Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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