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Mammalian Phenotype (MP): abnormal lymph node morphology

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   mammalian phenotype [MP:0000001] <29>
+ + + 3:   immune system phenotype [MP:0005387] <2>(76|114) (86|66|35)
+ + 2:   abnormal immune system morphology [MP:0000685] <3>(50|76) (60|35|18)
+ 1:   abnormal immune system organ morphology [MP:0002722] <8>(21|31) (26|15|9)
0:   abnormal lymph node morphology [MP:0002339] <11>(10|10) (12|4|1)
- 1:   abnormal peripheral lymph node morphology [MP:0008463] <7>(3|3) (4|1|0)
- 1:   abnormal abdominal lymph node morphology [MP:0009625] <2>(3|1) (3|0|0)
- 1:   abnormal lymph node cortex morphology [MP:0002343] <2>(2|2) (2|0|0)
- 1:   abnormal lymph node medulla morphology [MP:0002348] <2>(0|0) (0|0|0)
- 1:   abnormal lymph node number [MP:0000700] <2>(0|0) (0|0|0)
- 1:   abnormal lymph node size [MP:0000701] <2>(7|8) (8|3|0)
- 1:   abnormal afferent lymphatic vessel morphology [MP:0002349](0|0) (0|0|0)
- 1:   abnormal efferent lymphatic vessel morphology [MP:0002350](0|0) (0|0|0)
- 1:   abnormal lymph node cell ratio [MP:0008828](0|0) (0|0|0)
- 1:   abnormal lymph node trabecula morphology [MP:0002342](0|0) (0|0|0)
- 1:   absent lymph nodes [MP:0008024](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
CCCH zinc finger0.000197Direct
TNF-like0.0002229Direct
Inhibitor of apoptosis (IAP) repeat0.002214Inherited
TNF receptor-like0.009444Inherited
DEATH domain0.01701Inherited
p53-like transcription factors0.04156Inherited
E set domains0.09142Inherited
Complement control module/SCR domain0.101Inherited
4-helical cytokines0.1974Inherited
Bcl-2 inhibitors of programmed cell death0.2051Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
CCCH zinc finger0.0001404Direct
TNF-like0.0001579Direct
Interleukin 17F, IL-17F0.0003419Direct
Inhibitor of apoptosis (IAP) repeat0.0008215Direct
TNF receptor-like0.006527Inherited
DEATH domain, DD0.07946Inherited
Complement control module/SCR domain0.08743Inherited
Interferon regulatory factor0.1033Inherited
C-type lectin domain0.1302Inherited
Bcl-2 inhibitors of programmed cell death0.1828Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
CCCH zinc finger0.00009944Direct
TNF-like0.000113Direct
Inhibitor of apoptosis (IAP) repeat0.001263Inherited
TNF receptor-like0.005875Inherited
DEATH domain0.01105Inherited
p53-like transcription factors0.02894Inherited
E set domains0.06842Inherited
Complement control module/SCR domain0.07635Inherited
C-type lectin-like0.07641Inherited
4-helical cytokines0.1609Inherited
Bcl-2 inhibitors of programmed cell death0.1679Inherited
vWA-like0.2158Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0006477Direct
    57535,57535
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0.04695Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.1397Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.2684Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57586,57586,57586
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 0.0002664Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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