SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Mammalian Phenotype (MP): abnormal retinal photoreceptor layer morphology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   mammalian phenotype [MP:0000001] <29>
+ + + + + + + 7:   vision/eye phenotype [MP:0005391] <2>(43|53) (50|27|17)
+ + + + + + 6:   abnormal eye morphology [MP:0002092] <23>(39|49) (46|25|15)
+ + + + + 5:   abnormal posterior eye segment morphology [MP:0005195] <4>(21|24) (23|14|8)
+ + + + 4:   abnormal ocular fundus morphology [MP:0002864] <2>(19|23) (21|14|8)
+ + + 3:   abnormal retina morphology [MP:0001325] <23>(19|23) (21|14|8)
+ + 2:   abnormal retinal layer morphology [MP:0003727] <3>(11|16) (12|8|6)
+ 1:   abnormal retinal neuronal layer morphology [MP:0006069] <7>(11|15) (11|8|5)
0:   abnormal retinal photoreceptor layer morphology [MP:0003728] <1>(4|7) (5|3|2)
- 1:   abnormal retinal photoreceptor morphology [MP:0001004] <8>(4|7) (5|3|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
GAF domain-like0.00008442Direct
Clc chloride channel0.0002965Direct
CBS-domain pair0.001786Inherited
HD-domain/PDEase-like0.006109Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
GAF domain0.00004969Direct
Clc chloride channel0.0001835Direct
CBS-domain pair0.000887Direct
PDEase0.002999Inherited
cAMP-binding domain0.01132Inherited
Calmodulin-like0.01403Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GAF domain-like0.00004053Direct
Clc chloride channel0.0001526Direct
CBS-domain pair0.001011Inherited
HD-domain/PDEase-like0.0037Inherited
Cyclin-like0.1724Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.00004053Direct
    55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.00004053Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.4211Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.00004053Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.4211Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)