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Mammalian Phenotype (MP): abnormal limb long bone morphology

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   mammalian phenotype [MP:0000001] <29>
+ + + + 4:   skeleton phenotype [MP:0005390] <2>(46|63) (50|41|26)
+ + + 3:   abnormal skeleton morphology [MP:0005508] <15>(41|59) (47|38|25)
+ + + 3:   limbs/digits/tail phenotype [MP:0005371] <2>(18|26) (22|21|17)
+ + 2:   abnormal limb morphology [MP:0002109] <13>(12|21) (15|17|16)
+ + 2:   abnormal appendicular skeleton morphology [MP:0009250] <4>(12|17) (17|12|13)
+ 1:   abnormal limb bone morphology [MP:0002115] <5>(5|9) (7|8|8)
+ 1:   abnormal long bone morphology [MP:0003723] <11>(7|13) (11|11|11)
0:   abnormal limb long bone morphology [MP:0011504] <10>(5|9) (7|7|7)
- 1:   abnormal femur morphology [MP:0000559] <10>(2|4) (4|2|1)
- 1:   abnormal radius morphology [MP:0000552] <8>(0|0) (0|0|0)
- 1:   abnormal humerus morphology [MP:0005296] <7>(1|3) (1|0|0)
- 1:   abnormal ulna morphology [MP:0005108] <7>(0|0) (0|0|0)
- 1:   abnormal fibula morphology [MP:0002187] <6>(0|0) (0|0|0)
- 1:   abnormal metacarpal bone morphology [MP:0003073] <6>(1|1) (2|3|3)
- 1:   abnormal tibia morphology [MP:0000558] <6>(0|0) (0|0|0)
- 1:   abnormal metatarsal bone morphology [MP:0003072] <4>(0|0) (0|0|0)
- 1:   abnormal phalanx morphology [MP:0005306] <3>(0|0) (0|1|2)
- 1:   camptomelia [MP:0011505](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
TIMP-like0.0007694Direct
Homeodomain-like0.02088Inherited
YWTD domain0.02475Inherited
Metalloproteases ("zincins"), catalytic domain0.1648Inherited
PGBD-like0.4107Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
Transforming growth factor (TGF)-beta0.0006652Direct
Fibroblast growth factors (FGF)0.0006835Direct
VWC domain0.01502Inherited
YWTD domain0.01884Inherited
Homeodomain0.02839Inherited
MMP N-terminal domain0.3685Inherited
Matrix metalloproteases, catalytic domain0.3685Inherited
Hemopexin-like domain0.6515Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
TIMP-like0.0004139Direct
Homeodomain-like0.01374Inherited
YWTD domain0.01652Inherited
Metalloproteases ("zincins"), catalytic domain0.1316Inherited
PGBD-like0.364Inherited
LDL receptor-like module0.364Inherited
Hemopexin-like domain0.6477Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0003017Direct
    57196,63825
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.0007308Direct
    63825,57196
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.003784Inherited
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.004617Inherited
    55486,50923
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.02468Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.03998Inherited
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0.364Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57581,57184
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0.00007712Direct
    63825,57196,63825
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.0007308Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.0007308Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.003554Inherited
    57196,57184,57196
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.007662Inherited
    47090,55486,50923
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.02043Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.3432Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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