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Worm Phenotype (WP): vulva cell fate specification variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (79|32|13)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(47|41) (48|21|9)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(120|122) (121|48|12)
+ 1:   cell fate specification variant [WBPhenotype:0000216] <7>(21|18) (22|5|1)
+ 1:   vulva development variant [WBPhenotype:0000699] <3>(15|13) (16|2|1)
0:   vulva cell fate specification variant [WBPhenotype:0000220] <2>(12|12) (13|2|1)
- 1:   vulval cell induction variant [WBPhenotype:0001272] <4>(11|11) (12|2|1)
- 1:   posterior reversed vulval lineage [WBPhenotype:0002193](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.00000000001147Direct
E2F-DP heterodimerization region0.000001285Direct
HIT/MYND zinc finger-like0.0008603Direct
RNA-binding domain, RBD0.01469Inherited
FYVE/PHD zinc finger0.01469Inherited
Bromodomain0.03802Inherited
Chromo domain-like0.06369Inherited
SET domain0.06369Inherited
WD40 repeat-like0.2347Inherited
Protein kinase-like (PK-like)0.5971Inherited
HMG-box0.6163Inherited
Homeodomain-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001767Direct
Cell cycle transcription factor e2f-dp0.000001933Direct
TBP-associated factors, TAFs0.0006803Direct
Chromo domain0.000947Direct
Bromodomain0.0312Inherited
Histone lysine methyltransferases0.0534Inherited
PDZ domain0.0534Inherited
PHD domain0.1137Inherited
Pumilio repeat0.1535Inherited
WD40-repeat0.1642Inherited
Protein kinases, catalytic subunit0.5421Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000000009093Direct
E2F-DP heterodimerization region0.000001043Direct
HIT/MYND zinc finger-like0.0007173Direct
FYVE/PHD zinc finger0.01273Inherited
RNA-binding domain, RBD0.01273Inherited
Bromodomain0.03357Inherited
SET domain0.05683Inherited
Chromo domain-like0.05683Inherited
WD40 repeat-like0.2175Inherited
"Winged helix" DNA-binding domain0.4067Inherited
Protein kinase-like (PK-like)0.5753Inherited
HMG-box0.5945Inherited
Homeodomain-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.00003197Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0009464Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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