SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): oxygen response variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <11>(366|425) (369|192|56)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(358|416) (360|189|55)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(128|115) (130|52|16)
0:   oxygen response variant [WBPhenotype:0000464] <4>(10|6) (10|3|0)
- 1:   anoxia response variant [WBPhenotype:0002424] <3>(1|1) (1|0|0)
- 1:   hypoxia response variant [WBPhenotype:0002423] <3>(9|5) (9|3|0)
- 1:   high oxygen hypersensitive [WBPhenotype:0000466](0|0) (0|0|0)
- 1:   high oxygen resistant [WBPhenotype:0000465](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Class II aaRS and biotin synthetases0Direct
Nucleotidylyl transferase0.0000000000001745Direct
Class II aaRS ABD-related0.000000002858Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000000004708Direct
ValRS/IleRS/LeuRS editing domain0.000009169Direct
PYP-like sensor domain (PAS domain)0.0001108Direct
Quinoprotein alcohol dehydrogenase-like0.001306Inherited
Protein kinase-like (PK-like)0.003799Inherited
HLH, helix-loop-helix DNA-binding domain0.007472Inherited
Nucleic acid-binding proteins0.1511Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.000000000000009355Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000000003364Direct
ValRS/IleRS/LeuRS editing domain0.000006755Direct
Protein kinases, catalytic subunit0.0005848Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Class II aaRS and biotin synthetases0Direct
Nucleotidylyl transferase0.0000000000001377Direct
Class II aaRS ABD-related0.000000002282Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000000003762Direct
ValRS/IleRS/LeuRS editing domain0.000007476Direct
PYP-like sensor domain (PAS domain)0.0000911Direct
Quinoprotein alcohol dehydrogenase-like0.001093Inherited
Protein kinase-like (PK-like)0.00322Inherited
HLH, helix-loop-helix DNA-binding domain0.006399Inherited
Nucleic acid-binding proteins0.138Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00000009584Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.000007476Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)