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Worm Phenotype (WP): organ system development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ 1:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
0:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (79|32|13)
- 1:   reproductive system development variant [WBPhenotype:0000624] <10>(47|41) (48|21|9)
- 1:   nervous system development variant [WBPhenotype:0000623] <7>(9|6) (10|2|1)
- 1:   alimentary system development variant [WBPhenotype:0000617] <6>(12|9) (12|5|3)
- 1:   muscle system development variant [WBPhenotype:0000622] <5>(7|5) (7|2|1)
- 1:   coelomic system development variant [WBPhenotype:0000618] <3>(1|2) (1|0|0)
- 1:   epithelial system development variant [WBPhenotype:0000619] <3>(14|13) (14|5|1)
- 1:   ectopic organ [WBPhenotype:0002498] <2>(0|0) (0|0|0)
- 1:   excretory secretory system development variant [WBPhenotype:0000620] <2>(6|7) (6|1|0)
- 1:   organ senescence variant [WBPhenotype:0001740](0|0) (0|0|0)
- 1:   tube morphogenesis variant [WBPhenotype:0001848](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
14-3-3 protein0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Frizzled cysteine-rich domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
ARM repeat0.0000000000001191Direct
"Winged helix" DNA-binding domain0.000000000001802Direct
P-loop containing nucleoside triphosphate hydrolases0.000000000004691Direct
RNA-binding domain, RBD0.00000000003618Direct
Immunoglobulin0.00000000005852Direct
EGF/Laminin0.000000003565Direct
PH domain-like0.00000001015Direct
Homeodomain-like0.00000001742Direct
Bromodomain0.00000003137Direct
Fibronectin type III0.0000003971Direct
WD40 repeat-like0.0000004876Direct
Sm-like ribonucleoproteins0.0000008281Direct
PYP-like sensor domain (PAS domain)0.00001619Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001733Direct
Growth factor receptor domain0.00002277Direct
HLH, helix-loop-helix DNA-binding domain0.00003297Direct
Tubulin C-terminal domain-like0.00004076Direct
FYVE/PHD zinc finger0.0001045Direct
Sec7 domain0.0001241Direct
Tubulin nucleotide-binding domain-like0.0001753Direct
Band 7/SPFH domain0.0001932Direct
Protein kinase-like (PK-like)0.0002493Direct
Activating enzymes of the ubiquitin-like proteins0.0003453Direct
SNARE-like0.0003859Direct
Intermediate filament protein, coiled coil region0.0004139Direct
HMG-box0.0005507Direct
Sema domain0.0006179Direct
Sec1/munc18-like (SM) proteins0.0006179Direct
Plexin repeat0.0006179Direct
KA1-like0.0006179Direct
Integrin domains0.0008645Direct
ADC-like0.0008645Direct
E2F-DP heterodimerization region0.0008645Direct
Cdc48 domain 2-like0.0008645Direct
Cullin repeat-like0.0008793Direct
GroEL equatorial domain-like0.0008793Direct
GroEL-intermediate domain like0.0008793Direct
Myosin rod fragments0.0008793Direct
beta-beta-alpha zinc fingers0.0009054Direct
Cullin homology domain0.001816Inherited
GroEL apical domain-like0.001869Inherited
Calponin-homology domain, CH-domain0.001977Inherited
Lamin A/C globular tail domain0.003516Inherited
F1F0 ATP synthase subunit C0.003555Inherited
CCCH zinc finger0.004058Inherited
Cyclin-like0.005431Inherited
PDZ domain-like0.006605Inherited
Arginase/deacetylase0.007786Inherited
SMAD MH1 domain0.00886Inherited
Histone-fold0.00954Inherited
Nucleic acid-binding proteins0.009586Inherited
TPR-like0.01237Inherited
Chromo domain-like0.02474Inherited
Troponin coil-coiled subunits0.02964Inherited
TSP-1 type 1 repeat0.03397Inherited
Concanavalin A-like lectins/glucanases0.0389Inherited
BAR/IMD domain-like0.04164Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.05054Inherited
HIT/MYND zinc finger-like0.05764Inherited
vWA-like0.08029Inherited
Ankyrin repeat0.1042Inherited
Ubiquitin-like0.106Inherited
SMAD/FHA domain0.1323Inherited
Cystine-knot cytokines0.1406Inherited
SET domain0.1457Inherited
Cadherin-like0.2117Inherited
ABC transporter transmembrane region0.3492Inherited
Voltage-gated potassium channels0.4118Inherited
Acyl-CoA N-acyltransferases (Nat)0.4281Inherited
Nucleotide-diphospho-sugar transferases0.7481Inherited
F-box domain1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
Frizzled cysteine-rich domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Mo25 protein0Direct
Laminin-type module0Direct
Integrin domains0Direct
Pyk2-associated protein beta ARF-GAP domain0Direct
14-3-3 protein0Direct
Canonical RBD0.000000001239Direct
Homeodomain0.0000001297Direct
Bromodomain0.0000001754Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000004266Direct
Pleckstrin-homology domain (PH domain)0.000004515Direct
Fibronectin type III0.000005195Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00003673Direct
I set domains0.00007648Direct
Tubulin, C-terminal domain0.0001447Direct
Band 7/SPFH domain0.0001493Direct
Erythroid transcription factor GATA-10.0001493Direct
HLH, helix-loop-helix DNA-binding domain0.0002206Direct
Sec7 domain0.0002216Direct
Sema domain0.0002216Direct
PDZ domain0.0003596Direct
Pumilio repeat0.0004142Direct
ets domain0.0004142Direct
WD40-repeat0.0004671Direct
Tubulin, GTPase domain0.0005229Direct
Intermediate filament protein, coiled coil region0.0009526Direct
Proteasome subunits0.001001Inherited
Plexin repeat0.001087Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.001087Inherited
SCF ubiquitin ligase complex WHB domain0.001087Inherited
Cullin repeat0.001087Inherited
Cdc48 N-terminal domain-like0.001312Inherited
Cell cycle transcription factor e2f-dp0.001312Inherited
Cdc48 domain 2-like0.001312Inherited
DEATH domain, DD0.001312Inherited
PHD domain0.001312Inherited
Cyclin0.00157Inherited
HMG-box0.00157Inherited
Myosin rod fragments0.001754Inherited
Protein kinases, catalytic subunit0.002688Inherited
G proteins0.002933Inherited
Clathrin coat assembly domain0.003156Inherited
Clathrin adaptor core protein0.003156Inherited
Cullin homology domain0.003156Inherited
Paired domain0.003674Inherited
Histone lysine methyltransferases0.004829Inherited
Transforming growth factor (TGF)-beta0.005371Inherited
DEP domain0.005371Inherited
F1F0 ATP synthase subunit C0.005371Inherited
Calponin-homology domain, CH-domain0.006344Inherited
Laminin G-like module0.006769Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.007005Inherited
Histone deacetylase, HDAC0.007005Inherited
CCCH zinc finger0.01136Inherited
Group II chaperonin (CCT, TRIC), apical domain0.01322Inherited
SMAD MH1 domain0.01334Inherited
RecA protein-like (ATPase-domain)0.01334Inherited
N-acetyl transferase, NAT0.02002Inherited
Myb/SANT domain0.04413Inherited
SMAD domain0.04413Inherited
Armadillo repeat0.0503Inherited
Nucleosome core histones0.06208Inherited
Lamin A/C globular tail domain0.06733Inherited
TBP-associated factors, TAFs0.1643Inherited
Cadherin0.1643Inherited
Chromo domain0.2039Inherited
Ankyrin repeat0.2575Inherited
ABC transporter transmembrane region0.3877Inherited
ABC transporter ATPase domain-like0.6378Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
ArfGap/RecO-like zinc finger0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Frizzled cysteine-rich domain0Direct
14-3-3 protein0Direct
ARM repeat0.00000000000009393Direct
"Winged helix" DNA-binding domain0.000000000001426Direct
P-loop containing nucleoside triphosphate hydrolases0.000000000003716Direct
RNA-binding domain, RBD0.00000000002871Direct
Immunoglobulin0.00000000004646Direct
EGF/Laminin0.000000002847Direct
PH domain-like0.000000008123Direct
Homeodomain-like0.00000001395Direct
Bromodomain0.00000002517Direct
Fibronectin type III0.0000003208Direct
WD40 repeat-like0.0000003941Direct
Sm-like ribonucleoproteins0.000000671Direct
PYP-like sensor domain (PAS domain)0.00001323Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001416Direct
Growth factor receptor domain0.00001862Direct
HLH, helix-loop-helix DNA-binding domain0.000027Direct
Tubulin C-terminal domain-like0.00003338Direct
FYVE/PHD zinc finger0.00008592Direct
Sec7 domain0.0001021Direct
Tubulin nucleotide-binding domain-like0.0001444Direct
Band 7/SPFH domain0.0001592Direct
Protein kinase-like (PK-like)0.0002057Direct
Activating enzymes of the ubiquitin-like proteins0.0002857Direct
SNARE-like0.0003196Direct
Intermediate filament protein, coiled coil region0.000343Direct
HMG-box0.000457Direct
Sema domain0.0005132Direct
Plexin repeat0.0005132Direct
KA1-like0.0005132Direct
Sec1/munc18-like (SM) proteins0.0005132Direct
Cdc48 domain 2-like0.0007203Direct
E2F-DP heterodimerization region0.0007203Direct
ADC-like0.0007203Direct
Integrin domains0.0007203Direct
Cullin repeat-like0.000733Direct
Myosin rod fragments0.000733Direct
GroEL equatorial domain-like0.000733Direct
GroEL-intermediate domain like0.000733Direct
beta-beta-alpha zinc fingers0.0007548Direct
Cullin homology domain0.001524Inherited
GroEL apical domain-like0.001569Inherited
Calponin-homology domain, CH-domain0.001661Inherited
Lamin A/C globular tail domain0.002977Inherited
F1F0 ATP synthase subunit C0.003011Inherited
CCCH zinc finger0.00344Inherited
Cyclin-like0.004624Inherited
PDZ domain-like0.005645Inherited
Arginase/deacetylase0.006673Inherited
SMAD MH1 domain0.007611Inherited
beta and beta-prime subunits of DNA dependent RNA-polymerase0.007611Inherited
Histone-fold0.008208Inherited
Nucleic acid-binding proteins0.008248Inherited
TPR-like0.01069Inherited
Chromo domain-like0.02164Inherited
Troponin coil-coiled subunits0.02603Inherited
TSP-1 type 1 repeat0.02991Inherited
Concanavalin A-like lectins/glucanases0.03434Inherited
BAR/IMD domain-like0.0368Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04488Inherited
HIT/MYND zinc finger-like0.05132Inherited
vWA-like0.07213Inherited
Ankyrin repeat0.0943Inherited
Ubiquitin-like0.09593Inherited
SMAD/FHA domain0.1204Inherited
Cystine-knot cytokines0.1282Inherited
SET domain0.133Inherited
Cadherin-like0.1954Inherited
ABC transporter transmembrane region0.3292Inherited
Voltage-gated potassium channels0.391Inherited
Acyl-CoA N-acyltransferases (Nat)0.4071Inherited
Nucleotide-diphospho-sugar transferases0.7284Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
F-box domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    57863,48403
  • 57863 - ArfGap/RecO-like zinc finger
  • 48403 - Ankyrin repeat
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0000000003407Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00000003414Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00002389Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00003338Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0001444Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0001444Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0002857Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0003196Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.0005132Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0005132Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.0007203Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0007203Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0007203Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.0007203Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0007203Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000733Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000733Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0008253Direct
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.001569Inherited
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.003011Inherited
    52113,52113
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 0.007611Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.01512Inherited
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.01512Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0333Inherited
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.04044Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.08009Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3292Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00006923Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00007318Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001457Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0005132Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.0007203Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0007203Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000733Direct
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.001569Inherited
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.04044Inherited
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.04044Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.08009Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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