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Worm Phenotype (WP): reproductive system development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + 2:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
+ 1:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (79|32|13)
0:   reproductive system development variant [WBPhenotype:0000624] <10>(47|41) (48|21|9)
- 1:   vulva development variant [WBPhenotype:0000699] <3>(15|13) (16|2|1)
- 1:   copulatory structure development variant [WBPhenotype:0000429] <2>(0|0) (0|0|0)
- 1:   gonad development variant [WBPhenotype:0000691] <2>(20|17) (21|9|5)
- 1:   sex muscle development variant [WBPhenotype:0000669] <2>(0|0) (0|0|0)
- 1:   vulva uterus connection defective [WBPhenotype:0000283] <2>(10|8) (10|6|3)
- 1:   feminization of XX and XO animals [WBPhenotype:0000687] <1>(1|0) (1|0|0)
- 1:   fewer eggs in utero [WBPhenotype:0002019](0|0) (0|0|0)
- 1:   gonad migration variant [WBPhenotype:0000690](0|1) (0|0|0)
- 1:   no uterus [WBPhenotype:0000401](0|0) (0|0|0)
- 1:   sexual maturation defective [WBPhenotype:0000434](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat-like0.00003864Direct
Sema domain0.0000422Direct
Plexin repeat0.0000422Direct
Integrin domains0.00009801Direct
ADC-like0.00009801Direct
E2F-DP heterodimerization region0.00009801Direct
Cdc48 domain 2-like0.00009801Direct
Cullin homology domain0.0001334Direct
F1F0 ATP synthase subunit C0.0004324Direct
Immunoglobulin0.000559Direct
Chromo domain-like0.00118Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.002093Inherited
Bromodomain0.004985Inherited
Sm-like ribonucleoproteins0.004985Inherited
HMG-box0.02383Inherited
Fibronectin type III0.02518Inherited
FYVE/PHD zinc finger0.0366Inherited
SET domain0.03991Inherited
Cadherin-like0.04538Inherited
Acyl-CoA N-acyltransferases (Nat)0.05091Inherited
EGF/Laminin0.05416Inherited
WD40 repeat-like0.05663Inherited
Cyclin-like0.09127Inherited
Nucleic acid-binding proteins0.1045Inherited
GroEL equatorial domain-like0.1097Inherited
GroEL-intermediate domain like0.1097Inherited
GroEL apical domain-like0.1097Inherited
Arginase/deacetylase0.1797Inherited
Cystine-knot cytokines0.1797Inherited
HIT/MYND zinc finger-like0.1797Inherited
Protein kinase-like (PK-like)0.2876Inherited
P-loop containing nucleoside triphosphate hydrolases0.2885Inherited
TPR-like0.4387Inherited
"Winged helix" DNA-binding domain0.4906Inherited
SNARE-like0.4928Inherited
Nucleotide-diphospho-sugar transferases0.5392Inherited
Intermediate filament protein, coiled coil region0.6248Inherited
TSP-1 type 1 repeat0.6677Inherited
Tubulin nucleotide-binding domain-like0.9031Inherited
NAD(P)-binding Rossmann-fold domains0.9283Inherited
F-box domain0.9532Inherited
Homeodomain-like0.9655Inherited
Tubulin C-terminal domain-like0.9736Inherited
RNA-binding domain, RBD1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
PHD domain0.00001091Direct
Sema domain0.00001379Direct
Proteasome subunits0.00001782Direct
Plexin repeat0.00007368Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00007368Direct
SCF ubiquitin ligase complex WHB domain0.00007368Direct
Cullin repeat0.00007368Direct
Cdc48 N-terminal domain-like0.000146Direct
Cell cycle transcription factor e2f-dp0.000146Direct
Cdc48 domain 2-like0.000146Direct
Cullin homology domain0.0002308Direct
Transforming growth factor (TGF)-beta0.0006435Direct
F1F0 ATP synthase subunit C0.0006435Direct
N-acetyl transferase, NAT0.000844Direct
RecA protein-like (ATPase-domain)0.001721Inherited
Bromodomain0.003874Inherited
Armadillo repeat0.005208Inherited
I set domains0.006641Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.01136Inherited
HMG-box0.01948Inherited
Fibronectin type III0.02048Inherited
TBP-associated factors, TAFs0.03117Inherited
Cadherin0.03117Inherited
Histone lysine methyltransferases0.03317Inherited
Chromo domain0.04108Inherited
Pumilio repeat0.05624Inherited
WD40-repeat0.05793Inherited
Cyclin0.1196Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1587Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1587Inherited
Histone deacetylase, HDAC0.1587Inherited
Clathrin adaptor core protein0.1587Inherited
Protein kinases, catalytic subunit0.2609Inherited
PDZ domain0.5953Inherited
Intermediate filament protein, coiled coil region0.5958Inherited
Tubulin, GTPase domain0.882Inherited
Homeodomain0.8902Inherited
Tubulin, C-terminal domain0.9599Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Cullin repeat-like0.00003165Direct
Sema domain0.00003456Direct
Plexin repeat0.00003456Direct
Cdc48 domain 2-like0.00008052Direct
E2F-DP heterodimerization region0.00008052Direct
ADC-like0.00008052Direct
Integrin domains0.00008052Direct
Cullin homology domain0.0001098Direct
F1F0 ATP synthase subunit C0.0003583Direct
Immunoglobulin0.0004639Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0009711Direct
Chromo domain-like0.0009861Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00176Inherited
Bromodomain0.004239Inherited
Sm-like ribonucleoproteins0.004239Inherited
HMG-box0.02082Inherited
Fibronectin type III0.02203Inherited
FYVE/PHD zinc finger0.03229Inherited
SET domain0.03526Inherited
Cadherin-like0.04019Inherited
Acyl-CoA N-acyltransferases (Nat)0.04522Inherited
EGF/Laminin0.04816Inherited
WD40 repeat-like0.05039Inherited
Cyclin-like0.08233Inherited
Nucleic acid-binding proteins0.09458Inherited
GroEL apical domain-like0.09927Inherited
GroEL equatorial domain-like0.09927Inherited
GroEL-intermediate domain like0.09927Inherited
HIT/MYND zinc finger-like0.165Inherited
Arginase/deacetylase0.165Inherited
Cystine-knot cytokines0.165Inherited
Protein kinase-like (PK-like)0.269Inherited
P-loop containing nucleoside triphosphate hydrolases0.2698Inherited
TPR-like0.4177Inherited
"Winged helix" DNA-binding domain0.4692Inherited
SNARE-like0.4714Inherited
Nucleotide-diphospho-sugar transferases0.5176Inherited
Intermediate filament protein, coiled coil region0.603Inherited
TSP-1 type 1 repeat0.6463Inherited
Tubulin nucleotide-binding domain-like0.888Inherited
NAD(P)-binding Rossmann-fold domains0.9147Inherited
F-box domain0.9402Inherited
Homeodomain-like0.9534Inherited
Tubulin C-terminal domain-like0.9619Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0000179Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.00003456Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003456Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00008052Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00008052Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00008052Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.0003583Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.002056Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01349Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.06687Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.08233Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.08233Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.09927Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.09927Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.09927Inherited
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.3937Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.888Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003456Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.004239Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01349Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.02082Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0592Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.09927Inherited
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.3937Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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