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Worm Phenotype (WP): cell death variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
0:   cell death variant [WBPhenotype:0000729] <3>(58|51) (58|15|5)
- 1:   programmed cell death variant [WBPhenotype:0001172] <3>(56|48) (56|14|5)
- 1:   induced cell death variant [WBPhenotype:0001268] <2>(1|2) (1|1|0)
- 1:   cell degeneration [WBPhenotype:0000178] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
RBP11-like subunits of RNA polymerase0Direct
VPS9 domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
Clathrin adaptor appendage domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PX domain0Direct
Calpain large subunit, middle domain (domain III)0.0000005437Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000009071Direct
Cullin repeat-like0.000002212Direct
Skp1 dimerisation domain-like0.000006117Direct
Integrin domains0.0001261Direct
Terpenoid cyclases/Protein prenyltransferases0.0001261Direct
FYVE/PHD zinc finger0.0002648Direct
Tubby C-terminal domain-like0.0005534Direct
Cupredoxins0.0005534Direct
Caspase-like0.0005534Direct
Cullin homology domain0.0006824Direct
GroEL apical domain-like0.001312Inherited
Protein kinase-like (PK-like)0.003291Inherited
GroEL equatorial domain-like0.00364Inherited
GroEL-intermediate domain like0.00364Inherited
ENTH/VHS domain0.004441Inherited
Sm-like ribonucleoproteins0.004441Inherited
Cysteine proteinases0.005471Inherited
BAR/IMD domain-like0.01051Inherited
DNA repair protein MutS, domain III0.01926Inherited
5' to 3' exonuclease, C-terminal subdomain0.01926Inherited
Calcium ATPase, transmembrane domain M0.02278Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.02278Inherited
Activating enzymes of the ubiquitin-like proteins0.02547Inherited
DEATH domain0.02547Inherited
SH3-domain0.03958Inherited
Calcium ATPase, transduction domain A0.04757Inherited
PH domain-like0.0487Inherited
ARM repeat0.05534Inherited
SET domain0.05599Inherited
F1F0 ATP synthase subunit C0.06416Inherited
Hect, E3 ligase catalytic domain0.06416Inherited
Lamin A/C globular tail domain0.1127Inherited
HLH, helix-loop-helix DNA-binding domain0.1314Inherited
PIN domain-like0.1331Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.1331Inherited
Sec1/munc18-like (SM) proteins0.1331Inherited
SNARE-like0.1468Inherited
POZ domain0.2016Inherited
Intermediate filament protein, coiled coil region0.2189Inherited
Saposin0.2243Inherited
WD40 repeat-like0.3695Inherited
"Winged helix" DNA-binding domain0.3825Inherited
Nucleic acid-binding proteins0.4034Inherited
Chromo domain-like0.4094Inherited
Histone-fold0.5282Inherited
PLP-dependent transferases0.588Inherited
Metallo-dependent phosphatases0.6092Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6876Inherited
RNA-binding domain, RBD1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Protein prenyltransferases0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
Myotubularin-like phosphatases0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
PX domain0Direct
RNA-polymerase beta0Direct
Arginine methyltransferase0Direct
Cullin repeat0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.000000000000001874Direct
Calpain large subunit, middle domain (domain III)0.000001466Direct
RecA protein-like (ATPase-domain)0.000002062Direct
Skp1 dimerisation domain-like0.000006685Direct
Caspase catalytic domain0.000199Direct
Ephrin ectodomain0.000199Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002023Direct
Calpain large subunit, catalytic domain (domain II)0.0003269Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0006239Direct
Cullin homology domain0.0006239Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.00123Inherited
BTB/POZ domain0.00408Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.009055Inherited
G proteins0.01338Inherited
5' to 3' exonuclease catalytic domain0.01747Inherited
BAR domain0.01747Inherited
DNA repair protein MutS, domain III0.01747Inherited
5' to 3' exonuclease, C-terminal subdomain0.01747Inherited
Ubiquitin activating enzymes (UBA)0.01747Inherited
Cold shock DNA-binding domain-like0.01998Inherited
Protein kinases, catalytic subunit0.02399Inherited
SH3-domain0.04184Inherited
Histone lysine methyltransferases0.04626Inherited
Calcium ATPase, transduction domain A0.04626Inherited
Clathrin adaptor core protein0.0578Inherited
F1F0 ATP synthase subunit C0.06008Inherited
Hect, E3 ligase catalytic domain0.06008Inherited
Phosphotyrosine-binding domain (PTB)0.09198Inherited
Sec1/munc18-like (SM) proteins0.1265Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.1265Inherited
HLH, helix-loop-helix DNA-binding domain0.1333Inherited
Intermediate filament protein, coiled coil region0.2117Inherited
Translational machinery components0.2117Inherited
Armadillo repeat0.2505Inherited
Nucleosome core histones0.4901Inherited
Proteasome subunits0.5737Inherited
ABC transporter ATPase domain-like0.7311Inherited
Canonical RBD1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
DLC0Direct
RBP11-like subunits of RNA polymerase0Direct
VPS9 domain0Direct
PX domain0Direct
Calpain large subunit, middle domain (domain III)0.0000004397Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000007354Direct
Cullin repeat-like0.000001799Direct
Skp1 dimerisation domain-like0.000004986Direct
Terpenoid cyclases/Protein prenyltransferases0.0001037Direct
Integrin domains0.0001037Direct
FYVE/PHD zinc finger0.0002188Direct
Caspase-like0.0004593Direct
Tubby C-terminal domain-like0.0004593Direct
Cupredoxins0.0004593Direct
Cullin homology domain0.0005673Direct
GroEL apical domain-like0.001098Inherited
Protein kinase-like (PK-like)0.002785Inherited
GroEL equatorial domain-like0.003083Inherited
GroEL-intermediate domain like0.003083Inherited
ENTH/VHS domain0.00377Inherited
Sm-like ribonucleoproteins0.00377Inherited
Cysteine proteinases0.004659Inherited
BAR/IMD domain-like0.009057Inherited
5' to 3' exonuclease, C-terminal subdomain0.01675Inherited
DNA repair protein MutS, domain III0.01675Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.01989Inherited
Calcium ATPase, transmembrane domain M0.01989Inherited
DEATH domain0.02229Inherited
Activating enzymes of the ubiquitin-like proteins0.02229Inherited
SH3-domain0.03496Inherited
Calcium ATPase, transduction domain A0.04218Inherited
PH domain-like0.04321Inherited
ARM repeat0.04924Inherited
SET domain0.04982Inherited
F1F0 ATP synthase subunit C0.05727Inherited
Hect, E3 ligase catalytic domain0.05727Inherited
Lamin A/C globular tail domain0.1021Inherited
HLH, helix-loop-helix DNA-binding domain0.1195Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.1211Inherited
PIN domain-like0.1211Inherited
Sec1/munc18-like (SM) proteins0.1211Inherited
SNARE-like0.134Inherited
POZ domain0.1857Inherited
Intermediate filament protein, coiled coil region0.2024Inherited
Saposin0.2075Inherited
WD40 repeat-like0.3491Inherited
"Winged helix" DNA-binding domain0.362Inherited
Nucleic acid-binding proteins0.3828Inherited
Chromo domain-like0.3886Inherited
Histone-fold0.5065Inherited
PLP-dependent transferases0.5663Inherited
Metallo-dependent phosphatases0.5872Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6665Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.00000006048Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.000008809Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.00001361Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.003083Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003083Inherited
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.01675Inherited
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.01675Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.01989Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.3286Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.4006Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003083Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.009538Inherited
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.1211Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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