SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): embryonic cell organization biogenesis variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ + 2:   organism development variant [WBPhenotype:0000531] <10>(505|583) (505|248|68)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   embryonic cell physiology variant [WBPhenotype:0000763] <1>(12|17) (13|6|0)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
+ 1:   embryonic development variant [WBPhenotype:0000749] <21>(437|529) (437|228|63)
0:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(12|17) (13|6|0)
- 1:   nucleus defective early emb [WBPhenotype:0001138] <4>(2|4) (2|2|0)
- 1:   spindle defective early emb [WBPhenotype:0000759] <2>(7|11) (7|4|0)
- 1:   pronuclear nuclear appearance variant emb [WBPhenotype:0001374] <1>(5|6) (6|3|0)
- 1:   centrosome pair and associated pronuclear rotation variant [WBPhenotype:0000766](0|0) (0|0|0)
- 1:   cortical blebs present [WBPhenotype:0002007](0|0) (0|0|0)
- 1:   cortical dynamics defective early emb [WBPhenotype:0001044](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.0000000000001095Direct
Tubulin C-terminal domain-like0.00000000219Direct
ARM repeat0.00000001179Direct
Tubulin nucleotide-binding domain-like0.00000003618Direct
Prefoldin0.00000009399Direct
POZ domain0.00001744Direct
TPR-like0.0000656Direct
WD40 repeat-like0.0002065Direct
Nucleic acid-binding proteins0.0003103Direct
Cyclin-like0.0005337Direct
"Winged helix" DNA-binding domain0.0006676Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.0000000007168Direct
Armadillo repeat0.000000005395Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000000008509Direct
Tubulin, C-terminal domain0.000000008771Direct
Prefoldin0.0000000568Direct
Tubulin, GTPase domain0.0000001192Direct
Motor proteins0.0000002667Direct
Extended AAA-ATPase domain0.0000006236Direct
DEP domain0.00002526Direct
Pumilio repeat0.00004224Direct
Cyclin0.00008439Direct
DNA polymerase I0.0001581Direct
G proteins0.0004218Direct
WD40-repeat0.0004952Direct
DnaQ-like 3'-5' exonuclease0.0005568Direct
PDZ domain0.002506Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.00000000000008604Direct
Tubulin C-terminal domain-like0.000000001741Direct
ARM repeat0.000000009405Direct
Tubulin nucleotide-binding domain-like0.00000002894Direct
Prefoldin0.00000007532Direct
POZ domain0.00001421Direct
TPR-like0.00005365Direct
WD40 repeat-like0.0001697Direct
Nucleic acid-binding proteins0.0002556Direct
Cyclin-like0.0004418Direct
"Winged helix" DNA-binding domain0.0005536Direct
Calponin-homology domain, CH-domain0.02383Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00000002894Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000006398Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.00003675Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.001475Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.03029Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)