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Worm Phenotype (WP): meiosis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   organism development variant [WBPhenotype:0000531] <10>(504|578) (504|247|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(120|122) (121|48|12)
+ + + 3:   lethal [WBPhenotype:0000062] <5>(497|575) (497|246|68)
+ + + 3:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + 3:   embryonic development variant [WBPhenotype:0000749] <21>(445|532) (445|232|63)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(58|56) (59|22|4)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ + 2:   embryonic lethal [WBPhenotype:0000050] <7>(443|532) (443|231|63)
+ 1:   cell division variant [WBPhenotype:0000746] <20>(51|53) (51|20|4)
+ 1:   early embryonic lethal [WBPhenotype:0001100] <31>(53|58) (55|23|4)
+ 1:   germ cell development variant [WBPhenotype:0000812] <8>(55|56) (56|22|4)
0:   meiosis variant [WBPhenotype:0000775] <10>(34|31) (34|14|4)
- 1:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
- 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   meiotic spindle defective [WBPhenotype:0001868] <4>(2|2) (2|1|0)
- 1:   meiotic DNA double strand break formation variant [WBPhenotype:0001921] <1>(0|0) (0|0|0)
- 1:   polar body extrusion defective early emb [WBPhenotype:0000777] <1>(0|0) (0|0|0)
- 1:   anaphase I progression variant early embryo [WBPhenotype:0002006](0|0) (0|0|0)
- 1:   first polar body position variant [WBPhenotype:0000194](0|0) (0|0|0)
- 1:   meiosis metaphase to anaphase transition block [WBPhenotype:0001216](1|1) (1|0|0)
- 1:   no polar body formation [WBPhenotype:0000372](0|0) (0|0|0)
- 1:   passage through meiosis defective early emb [WBPhenotype:0000776](1|2) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000001964Direct
ADC-like0.00003974Direct
Cdc48 domain 2-like0.00003974Direct
Ribosomal proteins S24e, L23 and L15e0.0001802Direct
F1F0 ATP synthase subunit C0.0001802Direct
L30e-like0.0002278Direct
Translational machinery components0.0004912Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0007168Direct
POZ domain0.0007545Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.003222Inherited
Translation proteins SH3-like domain0.004756Inherited
P-loop containing nucleoside triphosphate hydrolases0.008398Inherited
GroEL equatorial domain-like0.01042Inherited
GroEL-intermediate domain like0.01042Inherited
GroEL apical domain-like0.01042Inherited
Smc hinge domain0.0109Inherited
TPR-like0.0116Inherited
Translation proteins0.02147Inherited
SNARE-like0.02481Inherited
Nucleic acid-binding proteins0.03537Inherited
Sm-like ribonucleoproteins0.03698Inherited
S15/NS1 RNA-binding domain0.05593Inherited
"Winged helix" DNA-binding domain0.186Inherited
Ribosomal protein S5 domain 2-like0.1868Inherited
Class II aaRS and biotin synthetases0.1868Inherited
Nucleotidylyl transferase0.3916Inherited
Activating enzymes of the ubiquitin-like proteins0.4388Inherited
Protein kinase-like (PK-like)0.7775Inherited
Histone-fold0.8978Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0Direct
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
RecA protein-like (ATPase-domain)0.0000003066Direct
BTB/POZ domain0.000002248Direct
Cdc48 N-terminal domain-like0.00005681Direct
Cdc48 domain 2-like0.00005681Direct
Anticodon-binding domain0.00005681Direct
Motor proteins0.0002063Direct
L30e/L7ae ribosomal proteins0.0002564Direct
F1F0 ATP synthase subunit C0.0002564Direct
Clathrin adaptor core protein0.001493Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.00181Inherited
Group II chaperonin (CCT, TRIC), apical domain0.00181Inherited
Elongation factors0.00217Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.004558Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.006991Inherited
Extended AAA-ATPase domain0.01133Inherited
Smc hinge domain0.02226Inherited
Translational machinery components0.02226Inherited
Tetratricopeptide repeat (TPR)0.05269Inherited
Cold shock DNA-binding domain-like0.05269Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.05269Inherited
Nitrogenase iron protein-like0.1525Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.1792Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.4033Inherited
Nucleosome core histones0.8126Inherited
Protein kinases, catalytic subunit0.8952Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
The spindle assembly checkpoint protein mad20Direct
LEM domain0Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000001597Direct
Cdc48 domain 2-like0.00003254Direct
ADC-like0.00003254Direct
F1F0 ATP synthase subunit C0.0001484Direct
Ribosomal proteins S24e, L23 and L15e0.0001484Direct
L30e-like0.0001879Direct
Translational machinery components0.0004076Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0005965Direct
POZ domain0.0006283Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002725Inherited
Translation proteins SH3-like domain0.004041Inherited
P-loop containing nucleoside triphosphate hydrolases0.007205Inherited
GroEL apical domain-like0.008976Inherited
GroEL equatorial domain-like0.008976Inherited
GroEL-intermediate domain like0.008976Inherited
Smc hinge domain0.009401Inherited
TPR-like0.01002Inherited
Translation proteins0.01871Inherited
SNARE-like0.0217Inherited
Nucleic acid-binding proteins0.03118Inherited
Sm-like ribonucleoproteins0.03263Inherited
S15/NS1 RNA-binding domain0.04976Inherited
"Winged helix" DNA-binding domain0.171Inherited
Ribosomal protein S5 domain 2-like0.1717Inherited
Class II aaRS and biotin synthetases0.1717Inherited
Nucleotidylyl transferase0.371Inherited
Activating enzymes of the ubiquitin-like proteins0.4178Inherited
Protein kinase-like (PK-like)0.7583Inherited
Histone-fold0.8825Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00003254Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0001484Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0007191Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0008788Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002725Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.008976Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.008976Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1064Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.3923Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.5083Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002725Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.008976Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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