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Worm Phenotype (WP): germ cell physiology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   organ system physiology variant [WBPhenotype:0000575] <8>(445|529) (445|229|63)
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   reproductive system physiology variant [WBPhenotype:0000613] <6>(432|517) (432|223|63)
0:   germ cell physiology variant [WBPhenotype:0000987] <6>(28|19) (29|8|1)
- 1:   oocyte physiology variant [WBPhenotype:0001424] <3>(15|15) (16|7|1)
- 1:   germ cell ionizing radiation response variant [WBPhenotype:0000712] <2>(6|3) (6|0|0)
- 1:   germline mortal [WBPhenotype:0000966](1|0) (1|0|0)
- 1:   sperm nonmotile [WBPhenotype:0000387](0|0) (0|0|0)
- 1:   sperm pseudopod physiology variant [WBPhenotype:0001498](0|0) (0|0|0)
- 1:   spermatocyte meiosis variant [WBPhenotype:0000981](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA ligase/mRNA capping enzyme, catalytic domain0Direct
14-3-3 protein0Direct
ARM repeat0.000000000000001794Direct
P-loop containing nucleoside triphosphate hydrolases0.00000005286Direct
Nucleic acid-binding proteins0.000000161Direct
Class II aaRS ABD-related0.0000001672Direct
GroEL-intermediate domain like0.0000006919Direct
GroEL equatorial domain-like0.0000006919Direct
GroEL apical domain-like0.000002124Direct
Sm-like ribonucleoproteins0.000002637Direct
F1F0 ATP synthase subunit C0.000004654Direct
ValRS/IleRS/LeuRS editing domain0.000004654Direct
Class II aaRS and biotin synthetases0.000007847Direct
Di-copper centre-containing domain0.00002523Direct
HRDC-like0.00006474Direct
Actin-like ATPase domain0.00006503Direct
CAD & PB1 domains0.000289Direct
WD40 repeat-like0.0003768Direct
t-snare proteins0.0004041Direct
Translation proteins0.0004611Direct
Sec1/munc18-like (SM) proteins0.0007824Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001249Inherited
"Winged helix" DNA-binding domain0.001859Inherited
Hect, E3 ligase catalytic domain0.004959Inherited
RING/U-box0.005851Inherited
Saposin0.1426Inherited
PLP-dependent transferases0.4349Inherited
Metallo-dependent phosphatases0.6189Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000003199Direct
Group II chaperonin (CCT, TRIC), apical domain0.000001314Direct
Actin/HSP700.000001436Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000006203Direct
ValRS/IleRS/LeuRS editing domain0.000006843Direct
F1F0 ATP synthase subunit C0.000006843Direct
Armadillo repeat0.00002222Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00004419Direct
Pumilio repeat0.00007974Direct
Hemocyanin middle domain0.00008361Direct
Anticodon-binding domain of Class II aaRS0.00008361Direct
Cold shock DNA-binding domain-like0.0004773Direct
t-snare proteins0.0005844Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001067Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.003298Inherited
Hect, E3 ligase catalytic domain0.006421Inherited
RING finger domain, C3HC40.09092Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
DNA ligase/mRNA capping enzyme, catalytic domain0Direct
ARM repeat0.000000000000001406Direct
P-loop containing nucleoside triphosphate hydrolases0.0000000423Direct
Nucleic acid-binding proteins0.0000001292Direct
Class II aaRS ABD-related0.0000001341Direct
GroEL equatorial domain-like0.0000005583Direct
GroEL-intermediate domain like0.0000005583Direct
GroEL apical domain-like0.000001722Direct
Sm-like ribonucleoproteins0.000002138Direct
F1F0 ATP synthase subunit C0.000003782Direct
ValRS/IleRS/LeuRS editing domain0.000003782Direct
Class II aaRS and biotin synthetases0.000006382Direct
Di-copper centre-containing domain0.00002059Direct
HRDC-like0.00005295Direct
Actin-like ATPase domain0.00005319Direct
CAD & PB1 domains0.000238Direct
WD40 repeat-like0.0003107Direct
t-snare proteins0.0003335Direct
Translation proteins0.0003812Direct
Sec1/munc18-like (SM) proteins0.0006504Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001041Inherited
"Winged helix" DNA-binding domain0.001557Inherited
Zinc beta-ribbon0.002551Inherited
Hect, E3 ligase catalytic domain0.004213Inherited
RING/U-box0.004981Inherited
Saposin0.13Inherited
PLP-dependent transferases0.4141Inherited
Metallo-dependent phosphatases0.5969Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56091,50249
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000005583Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000005583Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.000003782Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00001141Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00005295Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00005295Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0001036Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000005583Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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