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Worm Phenotype (WP): muscle cell physiology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   organ system physiology variant [WBPhenotype:0000575] <8>(445|529) (445|229|63)
+ 1:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   muscle system physiology variant [WBPhenotype:0000611] <4>(27|29) (29|14|5)
0:   muscle cell physiology variant [WBPhenotype:0000990] <8>(21|22) (22|13|4)
- 1:   striated muscle development variant [WBPhenotype:0000921] <2>(2|2) (2|1|1)
- 1:   body wall muscle physiology variant [WBPhenotype:0001292] <1>(2|2) (2|1|1)
- 1:   muscle cell activity variant [WBPhenotype:0001735] <1>(1|1) (1|0|0)
- 1:   pharyngeal muscle physiology variant [WBPhenotype:0001191] <1>(0|0) (0|0|0)
- 1:   somatic sheath physiology variant [WBPhenotype:0001198] <1>(4|3) (4|3|1)
- 1:   vulval muscle physiology variant [WBPhenotype:0001075] <1>(0|0) (0|0|0)
- 1:   muscle cell attachment variant [WBPhenotype:0000716](7|9) (8|8|2)
- 1:   muscle membrane potential variant [WBPhenotype:0002166](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
SH2 domain0.000000000006287Direct
PH domain-like0.000000000009172Direct
SH3-domain0.0000000003423Direct
PLC-like phosphodiesterases0.000000006609Direct
Growth factor receptor domain0.0000006343Direct
Second domain of FERM0.000004946Direct
EF-hand0.00001587Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00006297Direct
EGF/Laminin0.00009728Direct
Myosin rod fragments0.0001148Direct
Tropomyosin0.0001619Direct
Ubiquitin-like0.0002359Direct
Spectrin repeat0.0003888Direct
Protein kinase-like (PK-like)0.0004114Direct
Calponin-homology domain, CH-domain0.0004875Direct
GTPase activation domain, GAP0.001086Inherited
Voltage-gated potassium channels0.004898Inherited
(Phosphotyrosine protein) phosphatases II0.004951Inherited
Cysteine-rich domain0.005458Inherited
DBL homology domain (DH-domain)0.01243Inherited
Actin-like ATPase domain0.02869Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Mammalian PLC0Direct
SH2 domain0.0000000001302Direct
SH3-domain0.0000000007294Direct
EF-hand modules in multidomain proteins0.00000002631Direct
Pleckstrin-homology domain (PH domain)0.0000003186Direct
LIM domain0.0000008856Direct
PLC-like (P variant)0.000002257Direct
Third domain of FERM0.000005567Direct
Second domain of FERM0.000005573Direct
First domain of FERM0.00001385Direct
Laminin-type module0.00005446Direct
Growth factor receptor domain0.00005679Direct
Myosin rod fragments0.0001143Direct
Spectrin repeat0.0001715Direct
Tropomyosin0.0001715Direct
Protein kinases, catalytic subunit0.0005383Direct
Calponin-homology domain, CH-domain0.0005779Direct
BCR-homology GTPase activation domain (BH-domain)0.001525Inherited
DBL homology domain (DH-domain)0.01289Inherited
I set domains0.01289Inherited
Actin/HSP700.02525Inherited
Voltage-gated potassium channels0.02905Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
SH2 domain0.000000000004961Direct
PH domain-like0.000000000007237Direct
SH3-domain0.0000000002714Direct
PLC-like phosphodiesterases0.000000005268Direct
Growth factor receptor domain0.0000005117Direct
Second domain of FERM0.000004021Direct
EF-hand0.00001293Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000515Direct
EGF/Laminin0.0000797Direct
Myosin rod fragments0.00009412Direct
Tropomyosin0.0001329Direct
Ubiquitin-like0.0001939Direct
Spectrin repeat0.0003207Direct
Protein kinase-like (PK-like)0.0003396Direct
Calponin-homology domain, CH-domain0.0004035Direct
GTPase activation domain, GAP0.0009043Direct
Voltage-gated potassium channels0.004161Inherited
(Phosphotyrosine protein) phosphatases II0.004206Inherited
Cysteine-rich domain0.004641Inherited
DBL homology domain (DH-domain)0.01072Inherited
Actin-like ATPase domain0.02517Inherited
BAR/IMD domain-like0.0281Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000005433Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000000432Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.000000635Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.00000905Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00004486Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.00009412Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.00009412Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0004176Direct
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.002725Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.02517Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000000509Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.000007804Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001329Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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