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Worm Phenotype (WP): organism pathogen response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <11>(366|425) (369|192|56)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(358|416) (360|189|55)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(128|115) (130|52|16)
0:   organism pathogen response variant [WBPhenotype:0001012] <10>(24|24) (25|10|3)
- 1:   pathogen resistance increased [WBPhenotype:0001014] <4>(5|4) (5|1|0)
- 1:   pathogen susceptibility increased [WBPhenotype:0001013] <4>(6|5) (6|3|1)
- 1:   pathogen adherence variant [WBPhenotype:0001415] <3>(0|0) (0|0|0)
- 1:   pathogen load variant [WBPhenotype:0001819] <3>(1|0) (1|0|0)
- 1:   innate immune response variant [WBPhenotype:0002164] <2>(10|11) (11|3|1)
- 1:   pathogen infected pharynx variant [WBPhenotype:0001721] <2>(0|0) (0|0|0)
- 1:   pathogen release variant [WBPhenotype:0002172] <1>(1|1) (1|0|0)
- 1:   organism pathogen response defective [WBPhenotype:0002515](0|0) (0|0|0)
- 1:   pathogen avoidance variant [WBPhenotype:0002378](0|0) (0|0|0)
- 1:   pathogen induced gene expression variant [WBPhenotype:0001857](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Histone-fold0.00000002986Direct
PLC-like phosphodiesterases0.00001007Direct
PH domain-like0.00004655Direct
DBL homology domain (DH-domain)0.00005318Direct
Cysteine-rich domain0.001163Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.002793Inherited
Leucine zipper domain0.004087Inherited
Multidrug resistance efflux transporter EmrE0.004538Inherited
Saposin0.02696Inherited
Heme-dependent peroxidases0.0385Inherited
(Trans)glycosidases0.06285Inherited
WD40 repeat-like0.06932Inherited
HSP20-like chaperones0.08021Inherited
RNA-binding domain, RBD0.08615Inherited
GroEL equatorial domain-like0.2159Inherited
GroEL-intermediate domain like0.2159Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2159Inherited
GroEL apical domain-like0.2159Inherited
Protein kinase-like (PK-like)0.3489Inherited
HLH, helix-loop-helix DNA-binding domain0.421Inherited
Tubulin C-terminal domain-like0.4521Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Mammalian PLC0Direct
Nucleosome core histones0.00000000003179Direct
PLC-like (P variant)0.00000000009011Direct
Rhodopsin-like0.0000003741Direct
Pleckstrin-homology domain (PH domain)0.000006733Direct
DBL homology domain (DH-domain)0.00004685Direct
HSP200.0001906Direct
Erythroid transcription factor GATA-10.0007427Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.001306Inherited
Leucine zipper domain0.003589Inherited
WD40-repeat0.02Inherited
Myeloperoxidase-like0.03415Inherited
Canonical RBD0.06962Inherited
Armadillo repeat0.07605Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1331Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1331Inherited
Protein kinases, catalytic subunit0.1451Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2024Inherited
Proteasome subunits0.2024Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.341Inherited
HLH, helix-loop-helix DNA-binding domain0.4092Inherited
G proteins0.7155Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Histone-fold0.00000002396Direct
PLC-like phosphodiesterases0.000008211Direct
PH domain-like0.00003817Direct
DBL homology domain (DH-domain)0.00004362Direct
Cysteine-rich domain0.0009718Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.002359Inherited
Leucine zipper domain0.003465Inherited
Multidrug resistance efflux transporter EmrE0.003854Inherited
Saposin0.02363Inherited
Heme-dependent peroxidases0.03399Inherited
(Trans)glycosidases0.05607Inherited
WD40 repeat-like0.06201Inherited
HSP20-like chaperones0.07206Inherited
RNA-binding domain, RBD0.07762Inherited
GroEL apical domain-like0.1994Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1994Inherited
GroEL equatorial domain-like0.1994Inherited
GroEL-intermediate domain like0.1994Inherited
Protein kinase-like (PK-like)0.329Inherited
Nucleotidylyl transferase0.4002Inherited
HLH, helix-loop-helix DNA-binding domain0.4002Inherited
Tubulin C-terminal domain-like0.4311Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0001064Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.0114Inherited
    53300,56436
  • 53300 - vWA-like
  • 56436 - C-type lectin-like
  • 0.01475Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1994Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1994Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1994Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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