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Worm Phenotype (WP): programmed cell death variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ 1:   cell death variant [WBPhenotype:0000729] <3>(58|51) (58|15|5)
0:   programmed cell death variant [WBPhenotype:0001172] <3>(56|48) (56|14|5)
- 1:   apoptosis variant [WBPhenotype:0000730] <13>(51|44) (51|12|5)
- 1:   non apoptotic cell death variant [WBPhenotype:0001173] <2>(3|3) (3|1|0)
- 1:   somatic cell death variant [WBPhenotype:0000965](3|2) (3|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
RBP11-like subunits of RNA polymerase0Direct
VPS9 domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
Clathrin adaptor appendage domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PX domain0Direct
Skp1 dimerisation domain-like0.00000000000006978Direct
FYVE/PHD zinc finger0.000000003986Direct
Cullin homology domain0.00000005447Direct
GroEL apical domain-like0.0000001596Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000006887Direct
PH domain-like0.0000008467Direct
Cullin repeat-like0.000001617Direct
GroEL equatorial domain-like0.000001617Direct
GroEL-intermediate domain like0.000001617Direct
ENTH/VHS domain0.00000749Direct
Histone-fold0.00002203Direct
Sm-like ribonucleoproteins0.00007761Direct
SH3-domain0.0001015Direct
Nucleic acid-binding proteins0.0001015Direct
Integrin domains0.0001053Direct
DNA repair protein MutS, domain III0.0001053Direct
5' to 3' exonuclease, C-terminal subdomain0.0001053Direct
BAR/IMD domain-like0.0003368Direct
Activating enzymes of the ubiquitin-like proteins0.0003507Direct
WD40 repeat-like0.000457Direct
Tubby C-terminal domain-like0.0004639Direct
Cupredoxins0.0004639Direct
F1F0 ATP synthase subunit C0.0004639Direct
Caspase-like0.0004639Direct
DEATH domain0.000715Direct
SNARE-like0.0009689Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001245Inherited
Sec1/munc18-like (SM) proteins0.001245Inherited
Lamin A/C globular tail domain0.002162Inherited
SET domain0.002608Inherited
PIN domain-like0.004706Inherited
Hect, E3 ligase catalytic domain0.007645Inherited
Intermediate filament protein, coiled coil region0.01653Inherited
Chromo domain-like0.1132Inherited
POZ domain0.1523Inherited
Saposin0.2014Inherited
RNA-binding domain, RBD0.2964Inherited
Protein kinase-like (PK-like)0.3471Inherited
"Winged helix" DNA-binding domain0.5394Inherited
ARM repeat0.5445Inherited
PLP-dependent transferases0.5454Inherited
Metallo-dependent phosphatases0.5647Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6317Inherited
HLH, helix-loop-helix DNA-binding domain0.8031Inherited
Calcium ATPase, transmembrane domain M0.8604Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.8604Inherited
Calcium ATPase, transduction domain A0.89Inherited
Cysteine proteinases1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
Myotubularin-like phosphatases0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
PX domain0Direct
RNA-polymerase beta0Direct
Arginine methyltransferase0Direct
Cullin repeat0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain6.25e-16Direct
Skp1 dimerisation domain-like0.0000000000002571Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000001139Direct
Cullin homology domain0.0000001492Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000001071Direct
RecA protein-like (ATPase-domain)0.000001569Direct
Nucleosome core histones0.00007266Direct
BTB/POZ domain0.0001423Direct
Caspase catalytic domain0.0001663Direct
5' to 3' exonuclease catalytic domain0.0001663Direct
DNA repair protein MutS, domain III0.0001663Direct
Ephrin ectodomain0.0001663Direct
5' to 3' exonuclease, C-terminal subdomain0.0001663Direct
Cold shock DNA-binding domain-like0.0002671Direct
Clathrin adaptor core protein0.00027Direct
SH3-domain0.000616Direct
BAR domain0.000731Direct
F1F0 ATP synthase subunit C0.000731Direct
Ubiquitin activating enzymes (UBA)0.000731Direct
Histone lysine methyltransferases0.001028Inherited
Phosphotyrosine-binding domain (PTB)0.001268Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.001268Inherited
Sec1/munc18-like (SM) proteins0.001948Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001948Inherited
Armadillo repeat0.005997Inherited
Translational machinery components0.007293Inherited
Protein kinases, catalytic subunit0.009625Inherited
Hect, E3 ligase catalytic domain0.01183Inherited
Proteasome subunits0.0124Inherited
Intermediate filament protein, coiled coil region0.02546Inherited
Canonical RBD0.386Inherited
ABC transporter ATPase domain-like0.559Inherited
G proteins0.7602Inherited
HLH, helix-loop-helix DNA-binding domain0.7814Inherited
Calcium ATPase, transduction domain A0.8713Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
DLC0Direct
RBP11-like subunits of RNA polymerase0Direct
VPS9 domain0Direct
PX domain0Direct
Skp1 dimerisation domain-like0.00000000000005502Direct
FYVE/PHD zinc finger0.000000003184Direct
Cullin homology domain0.00000004374Direct
GroEL apical domain-like0.0000001285Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000005576Direct
PH domain-like0.0000006861Direct
Cullin repeat-like0.000001314Direct
GroEL equatorial domain-like0.000001314Direct
GroEL-intermediate domain like0.000001314Direct
ENTH/VHS domain0.000006108Direct
Histone-fold0.00001801Direct
Sm-like ribonucleoproteins0.00006367Direct
SH3-domain0.0000834Direct
Nucleic acid-binding proteins0.0000834Direct
5' to 3' exonuclease, C-terminal subdomain0.00008654Direct
DNA repair protein MutS, domain III0.00008654Direct
Integrin domains0.00008654Direct
BAR/IMD domain-like0.0002787Direct
Activating enzymes of the ubiquitin-like proteins0.0002902Direct
WD40 repeat-like0.0003788Direct
Caspase-like0.0003847Direct
Tubby C-terminal domain-like0.0003847Direct
Cupredoxins0.0003847Direct
F1F0 ATP synthase subunit C0.0003847Direct
DEATH domain0.000595Direct
SNARE-like0.0008079Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001041Inherited
Sec1/munc18-like (SM) proteins0.001041Inherited
Lamin A/C globular tail domain0.00182Inherited
SET domain0.0022Inherited
PIN domain-like0.003998Inherited
Hect, E3 ligase catalytic domain0.006549Inherited
Intermediate filament protein, coiled coil region0.01434Inherited
Chromo domain-like0.1026Inherited
POZ domain0.1392Inherited
Saposin0.1856Inherited
RNA-binding domain, RBD0.2774Inherited
Protein kinase-like (PK-like)0.3272Inherited
"Winged helix" DNA-binding domain0.5178Inherited
ARM repeat0.5229Inherited
PLP-dependent transferases0.5238Inherited
Metallo-dependent phosphatases0.5432Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6101Inherited
HLH, helix-loop-helix DNA-binding domain0.7845Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.8439Inherited
Calcium ATPase, transmembrane domain M0.8439Inherited
Calcium ATPase, transduction domain A0.875Inherited
Cysteine proteinases1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000001484Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000001314Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001314Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00008654Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00008654Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0106Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.01278Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.8439Inherited
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.9382Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001314Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.01434Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.8439Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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