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Worm Phenotype (WP): vesicle morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|524) (443|228|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|102) (106|54|17)
+ + 2:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <18>(82|83) (82|42|9)
+ 1:   vesicle organization variant [WBPhenotype:0001671] <2>(15|12) (15|5|1)
0:   vesicle morphology variant [WBPhenotype:0001323] <3>(14|12) (14|5|1)
- 1:   endosome morphology variant [WBPhenotype:0002090] <3>(12|11) (12|5|1)
- 1:   gut granule morphology variant [WBPhenotype:0002240] <2>(0|0) (0|0|0)
- 1:   presynaptic vesicle morphology altered [WBPhenotype:0002372](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
GroEL equatorial domain-like0.0000001241Direct
GroEL-intermediate domain like0.0000001241Direct
GroEL apical domain-like0.000000299Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000002166Direct
Riboflavin synthase domain-like0.000002849Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000002849Direct
F1F0 ATP synthase subunit C0.00000944Direct
Sm-like ribonucleoproteins0.00001996Direct
SNARE-like0.00008132Direct
ARM repeat0.0001468Direct
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0.00000001021Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000009538Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000002753Direct
RecA protein-like (ATPase-domain)0.0000006192Direct
Ferredoxin reductase FAD-binding domain-like0.000003104Direct
F1F0 ATP synthase subunit C0.00001464Direct
Clathrin coat assembly domain0.00009302Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00009855Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
GroEL equatorial domain-like0.00000009987Direct
GroEL-intermediate domain like0.00000009987Direct
GroEL apical domain-like0.0000002413Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000001761Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000002319Direct
Riboflavin synthase domain-like0.000002319Direct
F1F0 ATP synthase subunit C0.000007697Direct
Sm-like ribonucleoproteins0.00001632Direct
SNARE-like0.00006676Direct
ARM repeat0.0001208Direct
Protein kinase-like (PK-like)1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000009987Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000009987Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0000002689Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001624Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000009987Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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