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Worm Phenotype (WP): organelle organization biogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
0:   organelle organization biogenesis variant [WBPhenotype:0001344] <10>(30|29) (31|10|1)
- 1:   nuclear positioning variant [WBPhenotype:0000511] <5>(12|14) (13|5|1)
- 1:   fat associated bodies variant [WBPhenotype:0001901] <4>(2|1) (2|0|0)
- 1:   centrosome biogenesis variant [WBPhenotype:0001903] <3>(0|0) (0|0|0)
- 1:   cytoskeleton organization biogenesis variant [WBPhenotype:0001345] <2>(14|14) (14|5|0)
- 1:   mitochondrial content variant [WBPhenotype:0002266] <2>(1|1) (1|0|0)
- 1:   endocytic recycling compartment organization and biogenesis defective [WBPhenotype:0002237](0|0) (0|0|0)
- 1:   endosome biogenesis variant [WBPhenotype:0001803](0|0) (0|0|0)
- 1:   fibrous body-membranous organelle (FB-MO) assembly variant [WBPhenotype:0002386](0|0) (0|0|0)
- 1:   lysosome-related organelle biogenesis variant [WBPhenotype:0002265](0|0) (0|0|0)
- 1:   organelle fusion defective [WBPhenotype:0001809](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Heme-dependent catalase-like0Direct
Zn-finger domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
beta-sandwich domain of Sec23/240.00002709Direct
Tropomyosin0.0004592Direct
POZ domain0.00386Inherited
PDZ domain-like0.00469Inherited
Protein kinase-like (PK-like)0.0375Inherited
Actin-like ATPase domain0.1006Inherited
P-loop containing nucleoside triphosphate hydrolases0.111Inherited
Calponin-homology domain, CH-domain0.1342Inherited
GroEL-intermediate domain like0.1342Inherited
GroEL equatorial domain-like0.1342Inherited
GroEL apical domain-like0.1342Inherited
SNARE-like0.2351Inherited
SH3-domain0.2401Inherited
Class II aaRS and biotin synthetases0.3086Inherited
"Winged helix" DNA-binding domain0.3237Inherited
Tubulin nucleotide-binding domain-like0.3618Inherited
TPR-like0.3911Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4033Inherited
Spectrin repeat0.4033Inherited
ARM repeat0.4479Inherited
PH domain-like0.5593Inherited
Tubulin C-terminal domain-like0.592Inherited
Prefoldin0.7249Inherited
Nucleic acid-binding proteins0.742Inherited
NAD(P)-binding Rossmann-fold domains0.8457Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
beta-sandwich domain of Sec23/240Direct
Heme-dependent catalases0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Trunk domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
BTB/POZ domain0.00000005534Direct
Motor proteins0.000001186Direct
Pumilio repeat0.00000133Direct
DEP domain0.0001995Direct
PDZ domain0.0003478Direct
Tropomyosin0.0008623Direct
G proteins0.008065Inherited
Protein kinases, catalytic subunit0.0459Inherited
Group II chaperonin (CCT, TRIC), apical domain0.125Inherited
Actin/HSP700.125Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.125Inherited
Calponin-homology domain, CH-domain0.125Inherited
SH3-domain0.2305Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.2928Inherited
Tubulin, GTPase domain0.3507Inherited
Spectrin repeat0.3861Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.3861Inherited
Armadillo repeat0.4255Inherited
Extended AAA-ATPase domain0.5659Inherited
Tubulin, C-terminal domain0.5824Inherited
Prefoldin0.7113Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.7113Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
beta-sandwich domain of Sec23/240.00002211Direct
Tropomyosin0.0003796Direct
POZ domain0.00327Inherited
PDZ domain-like0.003981Inherited
Protein kinase-like (PK-like)0.03305Inherited
Actin-like ATPase domain0.09086Inherited
P-loop containing nucleoside triphosphate hydrolases0.1005Inherited
GroEL equatorial domain-like0.1222Inherited
Calponin-homology domain, CH-domain0.1222Inherited
GroEL apical domain-like0.1222Inherited
GroEL-intermediate domain like0.1222Inherited
SNARE-like0.2177Inherited
SH3-domain0.2225Inherited
Class II aaRS and biotin synthetases0.2893Inherited
Sm-like ribonucleoproteins0.2893Inherited
"Winged helix" DNA-binding domain0.3042Inherited
Tubulin nucleotide-binding domain-like0.3416Inherited
TPR-like0.3706Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.3827Inherited
Spectrin repeat0.3827Inherited
ARM repeat0.4269Inherited
PH domain-like0.5376Inherited
Tubulin C-terminal domain-like0.57Inherited
Prefoldin0.7045Inherited
Nucleic acid-binding proteins0.7222Inherited
NAD(P)-binding Rossmann-fold domains0.8285Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.09086Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1222Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1222Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2177Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.2893Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.3416Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.5966Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1222Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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