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Worm Phenotype (WP): gonad morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|524) (443|228|63)
+ + 2:   organ system morphology variant [WBPhenotype:0000534] <9>(98|103) (99|47|16)
+ 1:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (49|17|6)
0:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
- 1:   rachis morphology variant [WBPhenotype:0001940] <4>(15|14) (15|6|2)
- 1:   somatic gonad morphology variant [WBPhenotype:0000977] <3>(8|8) (8|3|1)
- 1:   diakinesis region organization variant [WBPhenotype:0001949](1|3) (1|0|0)
- 1:   diplotene region organization variant [WBPhenotype:0001950](2|6) (2|2|0)
- 1:   gonad degenerate [WBPhenotype:0001958](0|0) (0|0|0)
- 1:   gonad small [WBPhenotype:0001957](1|1) (1|0|0)
- 1:   gonad vesiculated [WBPhenotype:0001979](5|4) (5|1|1)
- 1:   male gonad morphology variant [WBPhenotype:0001357](0|0) (0|0|0)
- 1:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)
- 1:   rudimentary gonad [WBPhenotype:0001825](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
GroEL-intermediate domain like0Direct
14-3-3 protein0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000000002527Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000105Direct
Sm-like ribonucleoproteins0.000001108Direct
RBP11-like subunits of RNA polymerase0.000043Direct
Class II aaRS ABD-related0.0001206Direct
S15/NS1 RNA-binding domain0.0001946Direct
L30e-like0.0002501Direct
Smc hinge domain0.0005302Direct
Translational machinery components0.0005302Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0007846Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.003459Inherited
Class II aaRS and biotin synthetases0.007364Inherited
Translation proteins0.01337Inherited
Nucleic acid-binding proteins0.01502Inherited
Translation proteins SH3-like domain0.08993Inherited
Cysteine-rich domain0.1433Inherited
P-loop containing nucleoside triphosphate hydrolases0.1537Inherited
HMG-box0.198Inherited
Tubulin nucleotide-binding domain-like0.2236Inherited
Tubulin C-terminal domain-like0.2236Inherited
Ribosomal proteins S24e, L23 and L15e0.3376Inherited
"Winged helix" DNA-binding domain0.4896Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0.000000000005043Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001621Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000003914Direct
RecA protein-like (ATPase-domain)0.00002819Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00003075Direct
Anticodon-binding domain0.00006709Direct
Anticodon-binding domain of Class II aaRS0.00006709Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0002195Direct
Smc hinge domain0.0003018Direct
L30e/L7ae ribosomal proteins0.0003018Direct
Clathrin adaptor core protein0.001747Inherited
Elongation factors0.002687Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.005294Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00811Inherited
Cold shock DNA-binding domain-like0.04904Inherited
Laminin-type module0.06825Inherited
Translational machinery components0.06825Inherited
HMG-box0.1814Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.2052Inherited
Tubulin, GTPase domain0.2052Inherited
Tubulin, C-terminal domain0.2052Inherited
Cyclin0.5139Inherited
Nucleosome core histones0.9739Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
GroEL-intermediate domain like0Direct
14-3-3 protein0Direct
GroEL apical domain-like0.000000000002Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000008441Direct
Sm-like ribonucleoproteins0.0000008986Direct
RBP11-like subunits of RNA polymerase0.00003523Direct
Class II aaRS ABD-related0.00009915Direct
S15/NS1 RNA-binding domain0.0001603Direct
L30e-like0.0002064Direct
Smc hinge domain0.0004399Direct
Translational machinery components0.0004399Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0006539Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002928Inherited
Class II aaRS and biotin synthetases0.006304Inherited
Translation proteins0.01157Inherited
Nucleic acid-binding proteins0.01302Inherited
Translation proteins SH3-like domain0.08109Inherited
Cysteine-rich domain0.1307Inherited
P-loop containing nucleoside triphosphate hydrolases0.1404Inherited
HMG-box0.1823Inherited
Tubulin C-terminal domain-like0.2068Inherited
Tubulin nucleotide-binding domain-like0.2068Inherited
Ribosomal proteins S24e, L23 and L15e0.3178Inherited
"Winged helix" DNA-binding domain0.4682Inherited
Histone-fold0.9947Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00003523Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0001603Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0007975Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0009473Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002928Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.2068Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002928Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)