SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): pronuclear nuclear appearance variant emb

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + 3:   organism development variant [WBPhenotype:0000531] <10>(505|583) (505|248|68)
+ + + 3:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + 2:   embryonic development variant [WBPhenotype:0000749] <21>(437|529) (437|228|63)
+ + 2:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
+ + 2:   embryonic cell physiology variant [WBPhenotype:0000763] <1>(12|17) (13|6|0)
+ 1:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(12|17) (13|6|0)
0:   pronuclear nuclear appearance variant emb [WBPhenotype:0001374] <1>(5|6) (6|3|0)
- 1:   pronuclear nuclear appearance defective early emb [WBPhenotype:0001034] <1>(5|6) (5|3|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Tubulin C-terminal domain-like0.0000000000004729Direct
Tubulin nucleotide-binding domain-like0.00000000002054Direct
Cyclin-like0.02056Inherited
Prefoldin0.1438Inherited
TPR-like0.1562Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Tubulin, C-terminal domain0.000000000002317Direct
Tubulin, GTPase domain0.00000000008127Direct
Cyclin0.0184Inherited
Prefoldin0.1338Inherited
Armadillo repeat0.3909Inherited
Motor proteins0.4764Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Tubulin C-terminal domain-like0.0000000000003721Direct
Tubulin nucleotide-binding domain-like0.00000000001622Direct
Calponin-homology domain, CH-domain0.0009301Direct
Cyclin-like0.0179Inherited
Prefoldin0.1311Inherited
TPR-like0.1427Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00000000001622Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0179Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.04271Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)