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Worm Phenotype (WP): protein modification variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <11>(366|425) (369|192|56)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(358|416) (360|189|55)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(176|187) (179|86|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <10>(124|136) (127|63|20)
+ + 2:   metabolic pathway variant [WBPhenotype:0000463] <8>(39|31) (40|17|9)
+ + 2:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(72|65) (73|28|12)
+ 1:   protein metabolism variant [WBPhenotype:0001644] <9>(30|26) (31|15|8)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(39|44) (39|19|6)
0:   protein modification variant [WBPhenotype:0001382] <9>(13|10) (13|3|0)
- 1:   protein acetylation variant [WBPhenotype:0001917] <2>(2|2) (2|0|0)
- 1:   protein phosphorylation variant [WBPhenotype:0001349] <2>(6|5) (6|3|0)
- 1:   protein carbonylation variant [WBPhenotype:0002272] <1>(1|1) (1|0|0)
- 1:   protein methylation variant [WBPhenotype:0001383] <1>(3|2) (3|0|0)
- 1:   protein ubiquitination variant [WBPhenotype:0001865] <1>(0|0) (0|0|0)
- 1:   chromatin modification variant [WBPhenotype:0002420](0|0) (0|0|0)
- 1:   protein glycosylation variant [WBPhenotype:0002429](0|0) (0|0|0)
- 1:   protein neddylation variant [WBPhenotype:0001874](0|0) (0|0|0)
- 1:   protein sumoylation variant [WBPhenotype:0002362](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Arginase/deacetylase0Direct
SET domain0.000000001856Direct
FYVE/PHD zinc finger0.00004341Direct
Protein kinase-like (PK-like)0.0006846Direct
Chromo domain-like0.0007957Direct
DHS-like NAD/FAD-binding domain0.001465Inherited
Clavaminate synthase-like0.001857Inherited
Transducin (alpha subunit), insertion domain0.00693Inherited
Translation proteins0.0168Inherited
Cyclin-like0.05335Inherited
SH3-domain0.4313Inherited
PH domain-like0.5754Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sir2 family of transcriptional regulators0Direct
Histone deacetylase, HDAC0Direct
Heme-dependent catalases0Direct
Histone lysine methyltransferases0.0000002368Direct
Protein kinases, catalytic subunit0.0001071Direct
PHD domain0.000276Direct
Elongation factors0.006336Inherited
Transducin (alpha subunit), insertion domain0.006336Inherited
G proteins0.3292Inherited
Pleckstrin-homology domain (PH domain)0.4581Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Arginase/deacetylase0Direct
Heme-dependent catalase-like0Direct
SET domain0.00000000148Direct
FYVE/PHD zinc finger0.00003557Direct
Protein kinase-like (PK-like)0.0005692Direct
Chromo domain-like0.0006633Direct
DHS-like NAD/FAD-binding domain0.001227Inherited
Clavaminate synthase-like0.001558Inherited
Transducin (alpha subunit), insertion domain0.005926Inherited
Translation proteins0.01458Inherited
Cyclin-like0.04743Inherited
SH3-domain0.4104Inherited
PH domain-like0.5537Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.005926Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.005926Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01458Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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