SUPERFAMILY 1.75 HMM library and genome assignments server

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Worm Phenotype (WP): lysosome organization biogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
0:   lysosome organization biogenesis variant [WBPhenotype:0001430] <1>(3|3) (3|2|2)
- 1:   gut granule biogenesis reduced [WBPhenotype:0000706](3|3) (3|2|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ABC transporter transmembrane region0.0000001174Direct
SNARE-like0.000128Direct
FYVE/PHD zinc finger0.007149Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
ABC transporter transmembrane region0.0000001037Direct
ABC transporter ATPase domain-like0.000008974Direct
Clathrin coat assembly domain0.00001081Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ABC transporter transmembrane region0.00000009407Direct
SNARE-like0.000105Direct
FYVE/PHD zinc finger0.006103Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000009407Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0000002021Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0000002021Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000002021Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)