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Worm Phenotype (WP): protein degradation variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <11>(366|425) (369|192|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(358|416) (360|189|55)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(176|187) (179|86|26)
+ + 2:   metabolic pathway variant [WBPhenotype:0000463] <8>(39|31) (40|17|9)
+ + 2:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(72|65) (73|28|12)
+ 1:   protein metabolism variant [WBPhenotype:0001644] <9>(30|26) (31|15|8)
0:   protein degradation variant [WBPhenotype:0001645](7|8) (7|4|4)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Calpain large subunit, middle domain (domain III)0.00000000658Direct
Voltage-gated potassium channels0.0000001038Direct
Integrin domains0.0000005748Direct
Spectrin repeat0.000004606Direct
Immunoglobulin0.00004555Direct
Quinoprotein alcohol dehydrogenase-like0.00009363Direct
Homeodomain-like0.0008918Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Calpain large subunit, middle domain (domain III)0.00000001701Direct
Calpain large subunit, catalytic domain (domain II)0.000001528Direct
Voltage-gated potassium channels0.000002044Direct
Spectrin repeat0.000005392Direct
I set domains0.00001192Direct
Pleckstrin-homology domain (PH domain)0.00007747Direct
LIM domain0.000164Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Calpain large subunit, middle domain (domain III)0.000000005263Direct
Voltage-gated potassium channels0.00000008343Direct
Integrin domains0.000000465Direct
Spectrin repeat0.000003755Direct
Immunoglobulin0.00003734Direct
Quinoprotein alcohol dehydrogenase-like0.00007695Direct
Homeodomain-like0.0007434Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.000000001349Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00001452Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00004298Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0002554Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000006446Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00004918Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00007961Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0003028Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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