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Worm Phenotype (WP): vesicle organization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|524) (443|228|63)
+ + 2:   Variant [WBPhenotype:0000886] <2>
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|102) (106|54|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <18>(82|83) (82|42|9)
+ 1:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
0:   vesicle organization variant [WBPhenotype:0001671] <2>(15|12) (15|5|1)
- 1:   vesicle morphology variant [WBPhenotype:0001323] <3>(14|12) (14|5|1)
- 1:   vesicle number variant [WBPhenotype:0001332] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
GroEL equatorial domain-like0.000000138Direct
GroEL-intermediate domain like0.000000138Direct
GroEL apical domain-like0.0000003323Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000002475Direct
Riboflavin synthase domain-like0.00000311Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.00000311Direct
F1F0 ATP synthase subunit C0.00001013Direct
Sm-like ribonucleoproteins0.00002209Direct
SNARE-like0.00008854Direct
ARM repeat0.0001802Direct
P-loop containing nucleoside triphosphate hydrolases0.00022Direct
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0.00000001207Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000001083Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000003123Direct
RecA protein-like (ATPase-domain)0.0000006886Direct
Ferredoxin reductase FAD-binding domain-like0.000003379Direct
F1F0 ATP synthase subunit C0.00001593Direct
Clathrin coat assembly domain0.000101Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000109Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
GroEL equatorial domain-like0.0000001111Direct
GroEL-intermediate domain like0.0000001111Direct
GroEL apical domain-like0.0000002682Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000002014Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000002533Direct
Riboflavin synthase domain-like0.000002533Direct
F1F0 ATP synthase subunit C0.000008266Direct
Sm-like ribonucleoproteins0.00001806Direct
SNARE-like0.00007273Direct
ARM repeat0.0001484Direct
P-loop containing nucleoside triphosphate hydrolases0.0001814Direct
Protein kinase-like (PK-like)1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000001111Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000001111Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0000002941Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001745Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000001111Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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