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Worm Phenotype (WP): antimicrobial gene expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <11>(366|425) (369|192|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(358|416) (360|189|55)
+ + + 3:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(128|115) (130|52|16)
+ + 2:   organism pathogen response variant [WBPhenotype:0001012] <10>(24|24) (25|10|3)
+ 1:   innate immune response variant [WBPhenotype:0002164] <2>(10|11) (11|3|1)
0:   antimicrobial gene expression variant [WBPhenotype:0001800] <2>(10|11) (11|3|1)
- 1:   hyperinduction of antimicrobial peptide expression after infection [WBPhenotype:0002459](0|0) (0|0|0)
- 1:   no induction of antimicrobial peptide expression after infection [WBPhenotype:0002460](6|6) (6|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
Cysteine-rich domain0.000003453Direct
RNA-binding domain, RBD0.0001077Direct
GroEL equatorial domain-like0.000126Direct
GroEL-intermediate domain like0.000126Direct
GroEL apical domain-like0.0002023Direct
WD40 repeat-like0.0002489Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003056Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0005939Direct
Tubulin C-terminal domain-like0.001791Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.0000003994Direct
PLC-like (P variant)0.00002431Direct
Canonical RBD0.00009012Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0001235Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002132Direct
WD40-repeat0.0002515Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003412Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0003499Direct
Armadillo repeat0.0007438Direct
Proteasome subunits0.001395Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
Cysteine-rich domain0.000002813Direct
RNA-binding domain, RBD0.00008851Direct
GroEL equatorial domain-like0.0001037Direct
GroEL-intermediate domain like0.0001037Direct
GroEL apical domain-like0.0001667Direct
WD40 repeat-like0.0002054Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002527Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0004933Direct
Nucleotidylyl transferase0.0008738Direct
Tubulin C-terminal domain-like0.001502Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.000002804Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0001037Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0001037Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0001037Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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