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Worm Phenotype (WP): meiotic chromosome organization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|69)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + 2:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + 2:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
0:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
- 1:   chromosome disjunction defective [WBPhenotype:0001174] <3>(6|4) (6|1|0)
- 1:   crossover variant [WBPhenotype:0002083] <3>(0|0) (0|0|0)
- 1:   chromosome condensation variant [WBPhenotype:0001361] <1>(7|8) (7|3|1)
- 1:   chromosome decondensation variant [WBPhenotype:0002061] <1>(0|0) (0|0|0)
- 1:   crossover defective [WBPhenotype:0001814](0|0) (0|0|0)
- 1:   desynapsis defective [WBPhenotype:0001815](0|0) (0|0|0)
- 1:   meiotic chromatin reorganization variant [WBPhenotype:0001967](0|0) (0|0|0)
- 1:   synapsis defective [WBPhenotype:0001813](1|1) (1|0|0)
- 1:   synapsis formation variant [WBPhenotype:0002113](0|0) (0|0|0)
- 1:   synapsis maintenance defective [WBPhenotype:0002112](0|0) (0|0|0)
- 1:   univalent meiotic chromosomes [WBPhenotype:0002013](2|2) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
Histone-fold0.00000000000134Direct
F1F0 ATP synthase subunit C0.00001651Direct
Activating enzymes of the ubiquitin-like proteins0.0001978Direct
POZ domain0.01288Inherited
SNARE-like0.1454Inherited
Smc hinge domain0.3547Inherited
P-loop containing nucleoside triphosphate hydrolases0.4013Inherited
Protein kinase-like (PK-like)0.6018Inherited
GroEL apical domain-like0.7238Inherited
GroEL equatorial domain-like0.7238Inherited
GroEL-intermediate domain like0.7238Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.7531Inherited
"Winged helix" DNA-binding domain0.7697Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
Nucleosome core histones0.0000000000007442Direct
F1F0 ATP synthase subunit C0.0000236Direct
BTB/POZ domain0.0004594Direct
Nitrogenase iron protein-like0.001146Inherited
Smc hinge domain0.1293Inherited
Motor proteins0.1734Inherited
RecA protein-like (ATPase-domain)0.33Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.5331Inherited
Proteasome subunits0.6248Inherited
Protein kinases, catalytic subunit0.7009Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.7011Inherited
Group II chaperonin (CCT, TRIC), apical domain0.7011Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
The spindle assembly checkpoint protein mad20Direct
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
Histone-fold0.000000000001055Direct
F1F0 ATP synthase subunit C0.00001345Direct
Activating enzymes of the ubiquitin-like proteins0.0001624Direct
POZ domain0.01112Inherited
SNARE-like0.1325Inherited
Smc hinge domain0.3345Inherited
P-loop containing nucleoside triphosphate hydrolases0.3807Inherited
Protein kinase-like (PK-like)0.5798Inherited
GroEL equatorial domain-like0.7034Inherited
GroEL apical domain-like0.7034Inherited
GroEL-intermediate domain like0.7034Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.7335Inherited
"Winged helix" DNA-binding domain0.7506Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002858Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.7034Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.7034Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.7034Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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