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Worm Phenotype (WP): cell organization biogenesis variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|524) (443|228|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|102) (106|54|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <18>(82|83) (82|42|9)
0:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
- 1:   organelle organization biogenesis variant [WBPhenotype:0001344] <10>(29|29) (30|10|1)
- 1:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(13|17) (13|7|0)
- 1:   cytoplasmic appearance variant [WBPhenotype:0001427] <3>(5|5) (5|2|0)
- 1:   DAPI staining variant [WBPhenotype:0001233](0|0) (0|0|0)
- 1:   cell membrane organization biogenesis variant [WBPhenotype:0001982](8|9) (8|4|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like8.898e-16Direct
Prefoldin0.0000136Direct
beta-sandwich domain of Sec23/240.00009547Direct
ADC-like0.00009547Direct
Cdc48 domain 2-like0.00009547Direct
CAD & PB1 domains0.0004212Direct
F1F0 ATP synthase subunit C0.0004212Direct
P-loop containing nucleoside triphosphate hydrolases0.00114Inherited
GroEL equatorial domain-like0.002734Inherited
GroEL-intermediate domain like0.002734Inherited
GroEL apical domain-like0.002734Inherited
Tubulin C-terminal domain-like0.01341Inherited
ARM repeat0.01758Inherited
Tubulin nucleotide-binding domain-like0.02344Inherited
Nucleic acid-binding proteins0.02593Inherited
POZ domain0.02727Inherited
Spectrin repeat0.04547Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.05414Inherited
DNA/RNA polymerases0.0899Inherited
Tropomyosin0.144Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.144Inherited
TPR-like0.1706Inherited
Calponin-homology domain, CH-domain0.2378Inherited
WD40 repeat-like0.2392Inherited
Actin-like ATPase domain0.2486Inherited
Cyclin-like0.3012Inherited
SNARE-like0.316Inherited
"Winged helix" DNA-binding domain0.4954Inherited
PDZ domain-like0.5239Inherited
Class II aaRS and biotin synthetases0.5552Inherited
Translation proteins SH3-like domain0.5727Inherited
SH3-domain0.5922Inherited
PH domain-like0.8987Inherited
NAD(P)-binding Rossmann-fold domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
beta-sandwich domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Trunk domain of Sec23/240Direct
Heme-dependent catalases0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Skp1 dimerisation domain-like0.000000000000004059Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000001044Direct
Armadillo repeat0.0000001721Direct
RecA protein-like (ATPase-domain)0.000001349Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000001349Direct
BTB/POZ domain0.000006821Direct
Prefoldin0.000008428Direct
Cdc48 N-terminal domain-like0.0001507Direct
Cdc48 domain 2-like0.0001507Direct
Anticodon-binding domain0.0001507Direct
DEP domain0.0006635Direct
F1F0 ATP synthase subunit C0.0006635Direct
Extended AAA-ATPase domain0.001181Inherited
DNA polymerase I0.003713Inherited
G proteins0.01003Inherited
Tubulin, C-terminal domain0.01249Inherited
Tubulin, GTPase domain0.02193Inherited
Spectrin repeat0.04125Inherited
DnaQ-like 3'-5' exonuclease0.04125Inherited
Pumilio repeat0.04305Inherited
Cyclin0.07716Inherited
WD40-repeat0.1119Inherited
Proteasome subunits0.129Inherited
Tropomyosin0.1347Inherited
Motor proteins0.1348Inherited
Actin/HSP700.2318Inherited
Calponin-homology domain, CH-domain0.2318Inherited
Protein kinases, catalytic subunit0.3694Inherited
Clathrin adaptor core protein0.4004Inherited
PDZ domain0.5294Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.5454Inherited
SH3-domain0.594Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.8091Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Heme-dependent catalase-like0Direct
Skp1 dimerisation domain-like7e-16Direct
Prefoldin0.00001111Direct
Cdc48 domain 2-like0.00007847Direct
beta-sandwich domain of Sec23/240.00007847Direct
ADC-like0.00007847Direct
CAD & PB1 domains0.0003491Direct
F1F0 ATP synthase subunit C0.0003491Direct
P-loop containing nucleoside triphosphate hydrolases0.0009516Direct
GroEL apical domain-like0.002309Inherited
GroEL equatorial domain-like0.002309Inherited
GroEL-intermediate domain like0.002309Inherited
Tubulin C-terminal domain-like0.0116Inherited
ARM repeat0.01526Inherited
Tubulin nucleotide-binding domain-like0.02047Inherited
Nucleic acid-binding proteins0.0227Inherited
POZ domain0.02391Inherited
Spectrin repeat0.04027Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04815Inherited
DNA/RNA polymerases0.08106Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1313Inherited
Tropomyosin0.1313Inherited
TPR-like0.1566Inherited
Calponin-homology domain, CH-domain0.2205Inherited
WD40 repeat-like0.2219Inherited
Actin-like ATPase domain0.2309Inherited
Cyclin-like0.2822Inherited
SNARE-like0.2965Inherited
"Winged helix" DNA-binding domain0.474Inherited
PDZ domain-like0.5022Inherited
Class II aaRS and biotin synthetases0.5336Inherited
Translation proteins SH3-like domain0.5509Inherited
SH3-domain0.5704Inherited
Sm-like ribonucleoproteins0.6457Inherited
PH domain-like0.8835Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.000000000000002099Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00007847Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0003491Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.000947Direct
    57625,57625
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 0.000947Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.002309Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.002309Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.02047Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.07447Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1016Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1538Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.1653Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.2309Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57625,57625,57625
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 0.0003491Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.002309Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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