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Worm Phenotype (WP): RNA processing variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(171|182) (175|80|24)
+ + 2:   gene expression variant [WBPhenotype:0000717] <10>(122|134) (127|61|19)
+ 1:   RNA expression variant [WBPhenotype:0000113] <10>(19|16) (19|5|0)
0:   RNA processing variant [WBPhenotype:0000028] <8>(4|2) (4|0|0)
- 1:   alternative splicing variant [WBPhenotype:0001807] <1>(1|0) (1|0|0)
- 1:   3 prime target RNA uridylation reduced [WBPhenotype:0002254](0|0) (0|0|0)
- 1:   RNA degradation variant [WBPhenotype:0001826](0|0) (0|0|0)
- 1:   dsRNA processing defective [WBPhenotype:0002153](0|0) (0|0|0)
- 1:   mRNA splicing variant [WBPhenotype:0001834](0|0) (0|0|0)
- 1:   mRNA surveillance defective [WBPhenotype:0001538](3|1) (3|0|0)
- 1:   mRNA turnover variant [WBPhenotype:0001537](0|0) (0|0|0)
- 1:   pre miRNA processing defective [WBPhenotype:0002155](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Zn-binding ribosomal proteins0.000003021Direct
RNA-binding domain, RBD0.00000719Direct
L30e-like0.00001037Direct
Nucleic acid-binding proteins0.004063Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Canonical RBD0.0000008753Direct
Cold shock DNA-binding domain-like0.00359Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-binding ribosomal proteins0.000002469Direct
RNA-binding domain, RBD0.000005882Direct
L30e-like0.000008489Direct
Nucleic acid-binding proteins0.003452Inherited


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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