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Worm Phenotype (WP): RNA expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + 2:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ 1:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
0:   RNA expression variant [WBPhenotype:0000113] <10>(20|16) (20|5|0)
- 1:   RNA processing variant [WBPhenotype:0000028] <8>(4|2) (4|0|0)
- 1:   mRNA expression variant [WBPhenotype:0000114] <4>(8|9) (8|2|0)
- 1:   miRNA expression variant [WBPhenotype:0001779] <1>(4|4) (4|2|0)
- 1:   siRNA expression variant [WBPhenotype:0001776] <1>(2|1) (2|0|0)
- 1:   21U RNA expression variant [WBPhenotype:0001759](2|1) (2|1|0)
- 1:   22G RNA expression reduced [WBPhenotype:0002253](0|0) (0|0|0)
- 1:   X cluster small RNA expression variant [WBPhenotype:0002149](0|0) (0|0|0)
- 1:   pre mRNA levels increased [WBPhenotype:0001777](0|0) (0|0|0)
- 1:   small RNA germline expression variant [WBPhenotype:0002146](0|0) (0|0|0)
- 1:   small RNA somatic expression variant [WBPhenotype:0002147](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
PAZ domain0.00000000000004508Direct
PAP/OAS1 substrate-binding domain0.00000000001823Direct
RNA-binding domain, RBD0.0000000004649Direct
Nucleotidyltransferase0.00000000151Direct
Ribonuclease H-like0.000000002584Direct
dsRNA-binding domain-like0.00007097Direct
KA1-like0.0001365Direct
HLH, helix-loop-helix DNA-binding domain0.0003537Direct
Eukaryotic type KH-domain (KH-domain type I)0.0009607Direct
Zn-binding ribosomal proteins0.00382Inherited
ACP-like0.009508Inherited
CCCH zinc finger0.01508Inherited
L30e-like0.01859Inherited
Nucleic acid-binding proteins0.04563Inherited
Leucine zipper domain0.04613Inherited
Quinoprotein alcohol dehydrogenase-like0.04861Inherited
Translation proteins0.05299Inherited
Tubulin C-terminal domain-like0.124Inherited
Tubulin nucleotide-binding domain-like0.2578Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalases0Direct
PAZ domain0.000000000000998Direct
Canonical RBD0.000000004601Direct
HLH, helix-loop-helix DNA-binding domain0.0003231Direct
RNA editing terminal uridyl transferase 2, RET2, domain 20.0007741Direct
MIF4G domain-like0.0007741Direct
Double-stranded RNA-binding domain (dsRBD)0.002244Inherited
CCCH zinc finger0.01373Inherited
SMAD domain0.01639Inherited
Cold shock DNA-binding domain-like0.02024Inherited
Leucine zipper domain0.04212Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain0.0439Inherited
Histone lysine methyltransferases0.05683Inherited
Elongation factors0.08643Inherited
Tubulin, C-terminal domain0.1159Inherited
Tubulin, GTPase domain0.2456Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
PAZ domain0.00000000000003538Direct
PAP/OAS1 substrate-binding domain0.0000000000144Direct
RNA-binding domain, RBD0.0000000003687Direct
Nucleotidyltransferase0.0000000012Direct
Ribonuclease H-like0.000000002056Direct
dsRNA-binding domain-like0.00005806Direct
KA1-like0.0001119Direct
HLH, helix-loop-helix DNA-binding domain0.0002916Direct
Eukaryotic type KH-domain (KH-domain type I)0.0007993Direct
Zn-binding ribosomal proteins0.003237Inherited
ACP-like0.008166Inherited
CCCH zinc finger0.01306Inherited
L30e-like0.01616Inherited
Nucleic acid-binding proteins0.04034Inherited
Leucine zipper domain0.04079Inherited
Quinoprotein alcohol dehydrogenase-like0.04304Inherited
Translation proteins0.04703Inherited
Tubulin C-terminal domain-like0.1126Inherited
Tubulin nucleotide-binding domain-like0.2398Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.0000000001065Direct
    101690,53098
  • 101690 - PAZ domain
  • 53098 - Ribonuclease H-like
  • 0.00001594Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.01243Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.08471Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.2398Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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