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Worm Phenotype (WP): RNA expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + 2:   organism metabolism processing variant [WBPhenotype:0000027] <25>(171|182) (175|80|24)
+ 1:   gene expression variant [WBPhenotype:0000717] <10>(122|134) (127|61|19)
0:   RNA expression variant [WBPhenotype:0000113] <10>(19|16) (19|5|0)
- 1:   RNA processing variant [WBPhenotype:0000028] <8>(4|2) (4|0|0)
- 1:   mRNA expression variant [WBPhenotype:0000114] <4>(7|9) (7|2|0)
- 1:   miRNA expression variant [WBPhenotype:0001779] <1>(4|4) (4|2|0)
- 1:   siRNA expression variant [WBPhenotype:0001776] <1>(2|1) (2|0|0)
- 1:   21U RNA expression variant [WBPhenotype:0001759](2|1) (2|1|0)
- 1:   22G RNA expression reduced [WBPhenotype:0002253](0|0) (0|0|0)
- 1:   X cluster small RNA expression variant [WBPhenotype:0002149](0|0) (0|0|0)
- 1:   pre mRNA levels increased [WBPhenotype:0001777](0|0) (0|0|0)
- 1:   small RNA germline expression variant [WBPhenotype:0002146](0|0) (0|0|0)
- 1:   small RNA somatic expression variant [WBPhenotype:0002147](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
PAZ domain0.00000000000006549Direct
RNA-binding domain, RBD0.0000000002011Direct
PAP/OAS1 substrate-binding domain0.000000001275Direct
Ribonuclease H-like0.00000000138Direct
Nucleotidyltransferase0.00000008596Direct
dsRNA-binding domain-like0.00002169Direct
KA1-like0.0001243Direct
HLH, helix-loop-helix DNA-binding domain0.0004337Direct
Eukaryotic type KH-domain (KH-domain type I)0.0005428Direct
Zn-binding ribosomal proteins0.004143Inherited
CCCH zinc finger0.01693Inherited
L30e-like0.01999Inherited
Nucleic acid-binding proteins0.03523Inherited
Leucine zipper domain0.0499Inherited
Quinoprotein alcohol dehydrogenase-like0.05192Inherited
Translation proteins0.05798Inherited
Tubulin C-terminal domain-like0.1325Inherited
Tubulin nucleotide-binding domain-like0.2712Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalases0Direct
PAZ domain0.0000000000006666Direct
Canonical RBD0.000000001313Direct
HLH, helix-loop-helix DNA-binding domain0.0003566Direct
RNA editing terminal uridyl transferase 2, RET2, domain 20.0008104Direct
MIF4G domain-like0.0008104Direct
Double-stranded RNA-binding domain (dsRBD)0.002035Inherited
Cold shock DNA-binding domain-like0.00983Inherited
CCCH zinc finger0.0146Inherited
SMAD domain0.01705Inherited
Histone lysine methyltransferases0.03125Inherited
Leucine zipper domain0.04381Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain0.04542Inherited
Elongation factors0.08907Inherited
Tubulin, C-terminal domain0.1199Inherited
Tubulin, GTPase domain0.252Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
PAZ domain0.0000000000000518Direct
RNA-binding domain, RBD0.0000000001604Direct
PAP/OAS1 substrate-binding domain0.00000000102Direct
Ribonuclease H-like0.000000001104Direct
Nucleotidyltransferase0.0000000694Direct
dsRNA-binding domain-like0.0000178Direct
KA1-like0.0001028Direct
HLH, helix-loop-helix DNA-binding domain0.0003603Direct
Eukaryotic type KH-domain (KH-domain type I)0.0004518Direct
Zn-binding ribosomal proteins0.00352Inherited
CCCH zinc finger0.01468Inherited
L30e-like0.0174Inherited
Nucleic acid-binding proteins0.03104Inherited
Leucine zipper domain0.04427Inherited
Quinoprotein alcohol dehydrogenase-like0.04607Inherited
Translation proteins0.05158Inherited
Tubulin C-terminal domain-like0.1207Inherited
Tubulin nucleotide-binding domain-like0.2527Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.00000000733Direct
    101690,53098
  • 101690 - PAZ domain
  • 53098 - Ribonuclease H-like
  • 0.00001838Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.01361Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.09028Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.2527Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)