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Worm Phenotype (WP): mRNA expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   RNA expression variant [WBPhenotype:0000113] <10>(20|16) (20|5|0)
0:   mRNA expression variant [WBPhenotype:0000114] <4>(8|9) (8|2|0)
- 1:   mRNA export variant [WBPhenotype:0001568](1|1) (1|0|0)
- 1:   mRNA expression ectopic [WBPhenotype:0001915](1|1) (1|1|0)
- 1:   mRNA levels increased [WBPhenotype:0000136](4|4) (4|1|0)
- 1:   mRNA levels reduced [WBPhenotype:0000137](1|2) (1|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
ACP-like0.00003517Direct
Leucine zipper domain0.0005369Direct
Quinoprotein alcohol dehydrogenase-like0.00255Inherited
Translation proteins0.1112Inherited
CCCH zinc finger0.2982Inherited
RNA-binding domain, RBD0.86Inherited
PAZ domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalases0Direct
SMAD domain0.0001284Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.0002215Direct
Histone lysine methyltransferases0.000274Direct
Leucine zipper domain0.001208Inherited
Elongation factors0.003836Inherited
CCCH zinc finger0.3353Inherited
Canonical RBD0.9933Inherited
PAZ domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
ACP-like0.00002872Direct
Leucine zipper domain0.0004445Direct
Quinoprotein alcohol dehydrogenase-like0.002148Inherited
Translation proteins0.1007Inherited
CCCH zinc finger0.2791Inherited
RNA-binding domain, RBD0.8436Inherited
PAZ domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0014Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.1669Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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