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Worm Phenotype (WP): oogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ 1:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (64|27|6)
+ 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
0:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
- 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
- 1:   multiple nuclei oocyte [WBPhenotype:0001955](0|1) (0|0|0)
- 1:   oocyte number decreased [WBPhenotype:0001944](8|7) (8|3|1)
- 1:   oocytes lack nucleus [WBPhenotype:0001956](2|2) (2|1|0)
- 1:   precocious oogenesis [WBPhenotype:0001385](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
Translation proteins SH3-like domain0.000001197Direct
beta-sandwich domain of Sec23/240.00001664Direct
Translation proteins0.00004238Direct
Ribosomal proteins S24e, L23 and L15e0.00007664Direct
F1F0 ATP synthase subunit C0.00007664Direct
S15/NS1 RNA-binding domain0.00007664Direct
SNARE-like0.00007686Direct
Translational machinery components0.0002133Direct
ACP-like0.0004618Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001447Inherited
GroEL equatorial domain-like0.01115Inherited
GroEL-intermediate domain like0.01115Inherited
GroEL apical domain-like0.01115Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02592Inherited
L30e-like0.02592Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.02615Inherited
Class II aaRS and biotin synthetases0.03208Inherited
Sm-like ribonucleoproteins0.03931Inherited
Ribosomal protein S5 domain 2-like0.1172Inherited
POZ domain0.1968Inherited
Nucleic acid-binding proteins0.3722Inherited
Nucleotidylyl transferase0.4226Inherited
CCCH zinc finger0.4485Inherited
"Winged helix" DNA-binding domain0.8768Inherited
Histone-fold0.8807Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Skp1 dimerisation domain-like0Direct
beta-sandwich domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Trunk domain of Sec23/240Direct
Anticodon-binding domain0.00002611Direct
Translational machinery components0.00007046Direct
F1F0 ATP synthase subunit C0.0001197Direct
G proteins0.0001426Direct
Clathrin adaptor core protein0.0007167Direct
Elongation factors0.0007838Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002238Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.002519Inherited
Group II chaperonin (CCT, TRIC), apical domain0.002519Inherited
Nitrogenase iron protein-like0.005141Inherited
Cold shock DNA-binding domain-like0.005608Inherited
BTB/POZ domain0.02002Inherited
RecA protein-like (ATPase-domain)0.02719Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.03673Inherited
Proteasome subunits0.05394Inherited
L30e/L7ae ribosomal proteins0.05921Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.05921Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.06619Inherited
Pumilio repeat0.1973Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.1973Inherited
Extended AAA-ATPase domain0.294Inherited
CCCH zinc finger0.4675Inherited
Nucleosome core histones0.9707Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.0000009747Direct
beta-sandwich domain of Sec23/240.00001365Direct
Translation proteins0.00003487Direct
S15/NS1 RNA-binding domain0.00006318Direct
F1F0 ATP synthase subunit C0.00006318Direct
Ribosomal proteins S24e, L23 and L15e0.00006318Direct
SNARE-like0.00006337Direct
Translational machinery components0.0001764Direct
ACP-like0.0003839Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001215Inherited
GroEL-intermediate domain like0.009609Inherited
GroEL equatorial domain-like0.009609Inherited
GroEL apical domain-like0.009609Inherited
L30e-like0.02268Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02268Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.02288Inherited
Class II aaRS and biotin synthetases0.0282Inherited
Sm-like ribonucleoproteins0.03472Inherited
Ribosomal protein S5 domain 2-like0.1063Inherited
POZ domain0.1812Inherited
Nucleic acid-binding proteins0.3518Inherited
Nucleotidylyl transferase0.4012Inherited
CCCH zinc finger0.427Inherited
"Winged helix" DNA-binding domain0.8607Inherited
Histone-fold0.8648Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001365Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00006318Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0002214Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001215Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.009609Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.009609Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02268Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05147Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.05147Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.673Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001215Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.009609Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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