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Worm Phenotype (WP): no germ line

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ 1:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
0:   no germ line [WBPhenotype:0000215] <2>(7|9) (7|3|1)
- 1:   no oocytes [WBPhenotype:0000291](7|9) (7|3|1)
- 1:   sperm absent [WBPhenotype:0000290](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleic acid-binding proteins0.003629Inherited
Smc hinge domain0.06503Inherited
GroEL-intermediate domain like0.08065Inherited
GroEL equatorial domain-like0.08065Inherited
GroEL apical domain-like0.08065Inherited
Sm-like ribonucleoproteins0.2287Inherited
"Winged helix" DNA-binding domain0.379Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000000446Direct
Ubiquitin-related0.003127Inherited
Cold shock DNA-binding domain-like0.003127Inherited
Cyclin0.02582Inherited
Smc hinge domain0.03048Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.08762Inherited
Pumilio repeat0.1205Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1851Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1851Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleic acid-binding proteins0.003072Inherited
Smc hinge domain0.058Inherited
GroEL equatorial domain-like0.07236Inherited
GroEL apical domain-like0.07236Inherited
GroEL-intermediate domain like0.07236Inherited
Sm-like ribonucleoproteins0.2116Inherited
"Winged helix" DNA-binding domain0.3585Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.006979Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.07236Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.07236Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.07236Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)