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Worm Phenotype (WP): cell fate specification variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
0:   cell fate specification variant [WBPhenotype:0000216] <7>(20|18) (20|6|1)
- 1:   neuronal cell fate specification variant [WBPhenotype:0001510] <4>(9|6) (9|2|0)
- 1:   cell fate transformation [WBPhenotype:0000414] <3>(0|0) (0|1|0)
- 1:   loss of left right asymmetry [WBPhenotype:0001512] <2>(6|6) (6|2|0)
- 1:   vulva cell fate specification variant [WBPhenotype:0000220] <2>(12|12) (12|3|1)
- 1:   embryonic cell fate specification variant [WBPhenotype:0008001] <1>(0|0) (0|0|0)
- 1:   VPC competence variant [WBPhenotype:0002017](0|0) (0|0|0)
- 1:   cell induction variant [WBPhenotype:0000197](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0000001982Direct
HLH, helix-loop-helix DNA-binding domain0.000001115Direct
E2F-DP heterodimerization region0.00000976Direct
Bromodomain0.00003264Direct
Sm-like ribonucleoproteins0.00003744Direct
FYVE/PHD zinc finger0.00006948Direct
EGF/Laminin0.000435Direct
SET domain0.001369Inherited
Chromo domain-like0.001885Inherited
HMG-box0.001885Inherited
Protein kinase-like (PK-like)0.00269Inherited
cAMP-binding domain-like0.003553Inherited
DEATH domain0.003651Inherited
Fibronectin type III0.01236Inherited
HIT/MYND zinc finger-like0.0138Inherited
Voltage-gated potassium channels0.02486Inherited
PYP-like sensor domain (PAS domain)0.03231Inherited
Growth factor receptor domain0.03513Inherited
WD40 repeat-like0.1281Inherited
RNA-binding domain, RBD0.5924Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.000001654Direct
Homeodomain0.000004307Direct
Cell cycle transcription factor e2f-dp0.00001536Direct
Bromodomain0.00003472Direct
Histone lysine methyltransferases0.00003472Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002031Direct
PHD domain0.0002031Direct
Myb/SANT domain0.0008114Direct
cAMP-binding domain0.003539Inherited
TBP-associated factors, TAFs0.004515Inherited
Protein kinases, catalytic subunit0.004677Inherited
I set domains0.008379Inherited
Chromo domain0.009724Inherited
Growth factor receptor domain0.0206Inherited
Pumilio repeat0.0206Inherited
PDZ domain0.06875Inherited
WD40-repeat0.09561Inherited
Voltage-gated potassium channels0.1701Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0000001592Direct
HLH, helix-loop-helix DNA-binding domain0.0000009009Direct
E2F-DP heterodimerization region0.00000794Direct
Bromodomain0.00002665Direct
Sm-like ribonucleoproteins0.00003058Direct
FYVE/PHD zinc finger0.00005684Direct
EGF/Laminin0.0003593Direct
SET domain0.001143Inherited
HMG-box0.00158Inherited
Chromo domain-like0.00158Inherited
Protein kinase-like (PK-like)0.002267Inherited
cAMP-binding domain-like0.003007Inherited
DEATH domain0.003091Inherited
Fibronectin type III0.01067Inherited
HIT/MYND zinc finger-like0.01194Inherited
Voltage-gated potassium channels0.02174Inherited
PYP-like sensor domain (PAS domain)0.0284Inherited
Growth factor receptor domain0.03091Inherited
WD40 repeat-like0.1164Inherited
RNA-binding domain, RBD0.5704Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.003091Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.003379Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05315Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.09719Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.1727Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1265Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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