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Worm Phenotype (WP): cell fate specification variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
0:   cell fate specification variant [WBPhenotype:0000216] <7>(21|18) (21|5|1)
- 1:   neuronal cell fate specification variant [WBPhenotype:0001510] <4>(9|7) (9|1|0)
- 1:   cell fate transformation [WBPhenotype:0000414] <3>(0|0) (0|1|0)
- 1:   loss of left right asymmetry [WBPhenotype:0001512] <2>(6|6) (6|1|0)
- 1:   vulva cell fate specification variant [WBPhenotype:0000220] <2>(14|12) (14|3|1)
- 1:   embryonic cell fate specification variant [WBPhenotype:0008001] <1>(0|0) (0|0|0)
- 1:   VPC competence variant [WBPhenotype:0002017](0|0) (0|0|0)
- 1:   cell induction variant [WBPhenotype:0000197](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0000001938Direct
HLH, helix-loop-helix DNA-binding domain0.000001526Direct
E2F-DP heterodimerization region0.000008248Direct
Bromodomain0.00002383Direct
Sm-like ribonucleoproteins0.00002459Direct
FYVE/PHD zinc finger0.00004176Direct
EGF/Laminin0.00096Direct
SET domain0.001275Inherited
HMG-box0.001425Inherited
cAMP-binding domain-like0.002883Inherited
DEATH domain0.003068Inherited
Protein kinase-like (PK-like)0.003914Inherited
Chromo domain-like0.005029Inherited
HIT/MYND zinc finger-like0.01171Inherited
Voltage-gated potassium channels0.01953Inherited
Fibronectin type III0.02225Inherited
PYP-like sensor domain (PAS domain)0.02759Inherited
"Winged helix" DNA-binding domain0.04526Inherited
WD40 repeat-like0.1059Inherited
Growth factor receptor domain0.134Inherited
RNA-binding domain, RBD0.5664Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000228Direct
Homeodomain0.000004936Direct
Cell cycle transcription factor e2f-dp0.00001316Direct
Bromodomain0.0000255Direct
Histone lysine methyltransferases0.00002855Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001459Direct
PHD domain0.0001459Direct
Myb/SANT domain0.0007015Direct
cAMP-binding domain0.00288Inherited
TBP-associated factors, TAFs0.003942Inherited
Protein kinases, catalytic subunit0.007118Inherited
Growth factor receptor domain0.01712Inherited
Pumilio repeat0.01712Inherited
I set domains0.01873Inherited
Chromo domain0.02764Inherited
PDZ domain0.04035Inherited
WD40-repeat0.08257Inherited
Voltage-gated potassium channels0.1475Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0000001567Direct
HLH, helix-loop-helix DNA-binding domain0.000001245Direct
E2F-DP heterodimerization region0.000006747Direct
Bromodomain0.00001955Direct
Sm-like ribonucleoproteins0.00002018Direct
FYVE/PHD zinc finger0.00003437Direct
EGF/Laminin0.0008043Direct
SET domain0.001069Inherited
HMG-box0.001197Inherited
cAMP-binding domain-like0.00244Inherited
DEATH domain0.002598Inherited
Protein kinase-like (PK-like)0.003325Inherited
Chromo domain-like0.004284Inherited
HIT/MYND zinc finger-like0.0101Inherited
Voltage-gated potassium channels0.01699Inherited
Fibronectin type III0.01942Inherited
PYP-like sensor domain (PAS domain)0.02417Inherited
"Winged helix" DNA-binding domain0.04008Inherited
WD40 repeat-like0.09578Inherited
Growth factor receptor domain0.1221Inherited
RNA-binding domain, RBD0.5442Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.002598Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.04564Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.1523Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1893Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1105Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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