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Worm Phenotype (WP): vulva cell fate specification variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(79|72) (80|33|13)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(48|41) (49|22|9)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ 1:   vulva development variant [WBPhenotype:0000699] <3>(15|13) (15|3|1)
+ 1:   cell fate specification variant [WBPhenotype:0000216] <7>(20|18) (20|6|1)
0:   vulva cell fate specification variant [WBPhenotype:0000220] <2>(12|12) (12|3|1)
- 1:   vulval cell induction variant [WBPhenotype:0001272] <4>(11|11) (11|3|1)
- 1:   posterior reversed vulval lineage [WBPhenotype:0002193](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.00000000001477Direct
E2F-DP heterodimerization region0.000001429Direct
HIT/MYND zinc finger-like0.0009443Direct
FYVE/PHD zinc finger0.01595Inherited
RNA-binding domain, RBD0.01595Inherited
Bromodomain0.04018Inherited
SET domain0.06675Inherited
Chromo domain-like0.2042Inherited
WD40 repeat-like0.2459Inherited
Protein kinase-like (PK-like)0.6228Inherited
HMG-box0.6269Inherited
Homeodomain-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000002232Direct
Cell cycle transcription factor e2f-dp0.000002177Direct
TBP-associated factors, TAFs0.0007584Direct
Bromodomain0.03327Inherited
PDZ domain0.05637Inherited
Histone lysine methyltransferases0.05637Inherited
PHD domain0.1198Inherited
Pumilio repeat0.159Inherited
Chromo domain0.159Inherited
WD40-repeat0.1745Inherited
Protein kinases, catalytic subunit0.5701Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.00000000001166Direct
E2F-DP heterodimerization region0.000001156Direct
HIT/MYND zinc finger-like0.0007857Direct
RNA-binding domain, RBD0.01383Inherited
FYVE/PHD zinc finger0.01383Inherited
Bromodomain0.03542Inherited
SET domain0.05958Inherited
Chromo domain-like0.1882Inherited
WD40 repeat-like0.2282Inherited
Protein kinase-like (PK-like)0.6008Inherited
HMG-box0.605Inherited
Homeodomain-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.0000353Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0005801Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.001038Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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