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Worm Phenotype (WP): vulva cell fate specification variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (80|31|12)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(47|39) (48|20|8)
+ 1:   cell fate specification variant [WBPhenotype:0000216] <7>(21|18) (21|5|1)
+ 1:   vulva development variant [WBPhenotype:0000699] <3>(17|13) (17|3|1)
0:   vulva cell fate specification variant [WBPhenotype:0000220] <2>(14|12) (14|3|1)
- 1:   vulval cell induction variant [WBPhenotype:0001272] <4>(12|11) (12|2|1)
- 1:   posterior reversed vulval lineage [WBPhenotype:0002193](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000000008714Direct
E2F-DP heterodimerization region0.000001153Direct
HIT/MYND zinc finger-like0.0007773Direct
EGF/Laminin0.000841Direct
RNA-binding domain, RBD0.01381Inherited
FYVE/PHD zinc finger0.01381Inherited
Bromodomain0.03642Inherited
Chromo domain-like0.06148Inherited
SET domain0.06148Inherited
WD40 repeat-like0.2258Inherited
"Winged helix" DNA-binding domain0.4166Inherited
HMG-box0.6076Inherited
Protein kinase-like (PK-like)0.6343Inherited
Homeodomain-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001474Direct
Cell cycle transcription factor e2f-dp0.000001772Direct
TBP-associated factors, TAFs0.000628Direct
Chromo domain0.0008741Direct
Bromodomain0.03018Inherited
Histone lysine methyltransferases0.05182Inherited
PDZ domain0.05182Inherited
PHD domain0.1104Inherited
Pumilio repeat0.1506Inherited
WD40-repeat0.1586Inherited
Protein kinases, catalytic subunit0.583Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000000006929Direct
E2F-DP heterodimerization region0.0000009389Direct
HIT/MYND zinc finger-like0.0006502Direct
EGF/Laminin0.0007039Direct
FYVE/PHD zinc finger0.01195Inherited
RNA-binding domain, RBD0.01195Inherited
Bromodomain0.03214Inherited
SET domain0.05477Inherited
Chromo domain-like0.05477Inherited
WD40 repeat-like0.2089Inherited
"Winged helix" DNA-binding domain0.3954Inherited
HMG-box0.5854Inherited
Protein kinase-like (PK-like)0.6125Inherited
Homeodomain-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.00002891Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.000141Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.000859Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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