SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): spontaneous mutation rate increased

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + 2:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ 1:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
0:   spontaneous mutation rate increased [WBPhenotype:0000228] <1>(6|5) (6|3|1)
- 1:   transposon mutator [WBPhenotype:0001222](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Arginase/deacetylase0.00000002249Direct
Cullin homology domain0.0000006932Direct
Cullin repeat-like0.000002404Direct
SET domain0.00002578Direct
"Winged helix" DNA-binding domain0.00005112Direct
P-loop containing nucleoside triphosphate hydrolases0.00009272Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Histone deacetylase, HDAC0.00000000669Direct
Cullin repeat0.0000002064Direct
SCF ubiquitin ligase complex WHB domain0.0000002064Direct
Cullin homology domain0.0000004741Direct
Extended AAA-ATPase domain0.0007509Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Arginase/deacetylase0.0000000181Direct
Cullin homology domain0.0000005635Direct
Cullin repeat-like0.000001963Direct
SET domain0.00002117Direct
"Winged helix" DNA-binding domain0.00004211Direct
P-loop containing nucleoside triphosphate hydrolases0.0000765Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57903,82199
  • 57903 - FYVE/PHD zinc finger
  • 82199 - SET domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0000002459Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.0000002459Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0000002459Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)